PYME.localization.autopsf.roifit module

PYME.localization.autopsf.roifit.GenMultiChanZernikeDPSF(Z, zerns2, wavelengths, dx=70.0, output_shape=[61, 61, 61], **kwargs)
class PYME.localization.autopsf.roifit.VS

Bases: tuple

Attributes

x Alias for field number 0
y Alias for field number 1
z Alias for field number 2

Methods

count(...)
index((value, [start, ...) Raises ValueError if the value is not present.
x

Alias for field number 0

y

Alias for field number 1

z

Alias for field number 2

PYME.localization.autopsf.roifit.f_Interp3d(p, interpolator, Xg, Yg, Zg, safeRegion, *args)

3D PSF model function with 0 background - parameter vector [A, x0, y0, z0, ]

PYME.localization.autopsf.roifit.f_Interp3d2cr(p, interpolator, Xg, Yg, Zg, Xr, Yr, Zr, safeRegion, axialShift, ratio, *args)

3D PSF model function with constant background - parameter vector [A, x0, y0, z0, background]

PYME.localization.autopsf.roifit.fitROI(roi, md, interpolator, startParameters, r, axialShift)
PYME.localization.autopsf.roifit.fitallA(r2, mdh, zCoeffs, ns=1.51, axialShift=200.0)
PYME.localization.autopsf.roifit.fmfROI(roi, mdh, p1, voxelsize, sa, astig)
PYME.localization.autopsf.roifit.misfallA(r2, mdh, zCoeffs, ns=1.51, axialShift=None, colourRatio=None, beadSize=0)
PYME.localization.autopsf.roifit.misfallB(r2, mdh, zCoeffs, interpolatorName, estimatorName, wavelengths=[700, 700], ns=1.51, axialShift=None, colourRatio=None, beadSize=0, fitBG=False, psf_model_settings={'NA': 1.45, 'vectorial': True, 'apodization': 'sine', 'n': 1.51})
PYME.localization.autopsf.roifit.misfallB_MP(task_queue, results_queue, data)
PYME.localization.autopsf.roifit.misfitROI(roi, md, interpolator, startParameters, r, axialShift)
PYME.localization.autopsf.roifit.startEstROI(roi, md, interpolator, estimator, r, axialShift, fitBG=False)