PYME.recipes.tracking module

Created on Tue Dec 29 19:59:15 2015

@author: david

class PYME.recipes.tracking.ExtractTracks(parent=None, **kwargs)

Bases: PYME.recipes.base.ModuleBase

Extract tracks from a measurement set with pre-assigned clump IDs

Attributes

default_view
hide_in_overview
inputs
outputs
pipeline_view
pipeline_view_min

Methods

execute(namespace)
trait_items_event(event_trait,name,items_event)
trait_property_changed(...)
traits_init()
traits_inited([True])
execute(namespace)
class PYME.recipes.tracking.FindClumps(parent=None, **kwargs)

Bases: PYME.recipes.base.ModuleBase

Generates tracks / clumps of single molecules based on spatial and temporal grouping. This is appropriate for diffraction limited objects where size, shape, or other features do not contin useful tracking information.

One of the main uses for this module is to chain multiple observations of a single molecule together.

Attributes

default_view
hide_in_overview
inputs
outputs
pipeline_view
pipeline_view_min

Methods

execute(namespace)
trait_items_event(event_trait,name,items_event)
trait_property_changed(...)
traits_init()
traits_inited([True])
execute(namespace)
class PYME.recipes.tracking.FitFusionTraces(parent=None, **kwargs)

Bases: PYME.recipes.base.ModuleBase

Extract tracks from a measurement set with pre-assigned clump IDs

Attributes

default_view
hide_in_overview
inputs
outputs
pipeline_view
pipeline_view_min

Methods

execute(namespace)
trait_items_event(event_trait,name,items_event)
trait_property_changed(...)
traits_init()
traits_inited([True])
execute(namespace)
class PYME.recipes.tracking.LoadSpeckles(parent=None, **kwargs)

Bases: PYME.recipes.base.ModuleBase

Loads Speckle data as used by the karatekin lab

Attributes

default_view
hide_in_overview
inputs
outputs
pipeline_view
pipeline_view_min

Methods

execute(namespace)
trait_items_event(event_trait,name,items_event)
trait_property_changed(...)
traits_init()
traits_inited([True])
execute(namespace)
class PYME.recipes.tracking.TrackFeatures(*args, **kwargs)

Bases: PYME.recipes.base.ModuleBase

Take just certain columns of a variable

Attributes

default_view
hide_in_overview
inputs
outputs
pipeline_view
pipeline_view_min

Methods

OnFeaturesChanged()
OnParamChange()
Track(objects[, newTracker]) Track objects based on a given set of feature vectors
TrackWithPipeline(pipeline) Support legacy interactive mode where we insert our results
execute(namespace)
trait_items_event(event_trait,name,items_event)
trait_property_changed(...)
traits_init()
traits_inited([True])
OnFeaturesChanged()
OnParamChange()
Track(objects, newTracker=False)

Track objects based on a given set of feature vectors

TrackWithPipeline(pipeline)

Support legacy interactive mode where we insert our results into the pipeline (used when called from PYME.DSView.modules.particleTracking)

execute(namespace)