PYME.simulation.ChemDE.reactions module¶
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class
PYME.simulation.ChemDE.reactions.Reaction(equation, k_forward=0, k_reverse=0, name=None, catalysts=[])¶ Methods
getDEs([ties])getRateInfo(species, ties, constants)getSpecies()-
getDEs(ties={})¶
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getRateInfo(species, ties, constants)¶
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getSpecies()¶
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class
PYME.simulation.ChemDE.reactions.Stimulus(initValue, times, values)¶ Piecewise constant stimulus function
Methods
__call__(t)
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class
PYME.simulation.ChemDE.reactions.System(reactions, constants={}, stimulae={}, ties={})¶ Methods
GenerateGradAndJacCode()GradFcn(t, y)JacFcn(t, y)getDEs()solve(tvals[, grad])-
GenerateGradAndJacCode()¶
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GradFcn(t, y)¶
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JacFcn(t, y)¶
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getDEs()¶
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solve(tvals, grad=False)¶
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PYME.simulation.ChemDE.reactions.gradFunction(t, y, dtype, DEs, constants, stimulae)¶