Python Module Index

p
 
p
PYME
    PYME.Acquire
    PYME.Acquire.acquiremainframe
    PYME.Acquire.ActionManager
    PYME.Acquire.autofocus
    PYME.Acquire.eventLog
    PYME.Acquire.ExecTools
    PYME.Acquire.frameWrangler
    PYME.Acquire.HDFSpooler
    PYME.Acquire.HTTPHDFSpooler
    PYME.Acquire.HTTPSpooler
    PYME.Acquire.microscope
    PYME.Acquire.mytimer
    PYME.Acquire.positionTracker
    PYME.Acquire.protocol
    PYME.Acquire.PYMEAcquire
    PYME.Acquire.QueueSpooler
    PYME.Acquire.sampleInformation
    PYME.Acquire.setup
    PYME.Acquire.SpoolController
    PYME.Acquire.Spooler
    PYME.Acquire.stackSettings
    PYME.Acquire.ui
    PYME.Acquire.ui.actionUI
    PYME.Acquire.ui.AnalysisSettingsUI
    PYME.Acquire.ui.HDFSpoolFrame
    PYME.Acquire.ui.intsliders
    PYME.Acquire.ui.lasersliders
    PYME.Acquire.ui.positionUI
    PYME.Acquire.ui.preflight
    PYME.Acquire.ui.selectCameraPanel
    PYME.Acquire.ui.seqdialog
    PYME.Acquire.ui.splashScreen
    PYME.Acquire.ui.voxelSizeDialog
    PYME.Acquire.Utils
    PYME.Acquire.Utils.fastTiler
    PYME.Acquire.Utils.MultiPointScanner
    PYME.Acquire.Utils.pointScanner
    PYME.Acquire.Utils.sarcSpacing
    PYME.Acquire.Utils.vibrationAnalysis
    PYME.Acquire.zScanner
    PYME.Analysis
    PYME.Analysis.angleFilter
    PYME.Analysis.annealThresh
    PYME.Analysis.Auto
    PYME.Analysis.Auto.auto_drift_render
    PYME.Analysis.Auto.auto_photophysics
    PYME.Analysis.binAvg
    PYME.Analysis.BleachProfile
    PYME.Analysis.BleachProfile.deMod
    PYME.Analysis.BleachProfile.fitRecover
    PYME.Analysis.BleachProfile.intensProf
    PYME.Analysis.BleachProfile.kinModels
    PYME.Analysis.BleachProfile.rawIntensity
    PYME.Analysis.buffers
    PYME.Analysis.Colocalisation
    PYME.Analysis.Colocalisation.colocScaleDep
    PYME.Analysis.Colocalisation.correlationCoeffs
    PYME.Analysis.Colocalisation.distColoc
    PYME.Analysis.Colocalisation.edtColoc
    PYME.Analysis.cramerRao
    PYME.Analysis.deTile
    PYME.Analysis.implicitFilter
    PYME.Analysis.MetaData
    PYME.Analysis.moments
    PYME.Analysis.multicolourMeta
    PYME.Analysis.optic_flow
    PYME.Analysis.piecewise
    PYME.Analysis.piecewiseMapping
    PYME.Analysis.points
    PYME.Analysis.points.astigmatism
    PYME.Analysis.points.astigmatism.astigTools
    PYME.Analysis.points.DeClump
    PYME.Analysis.points.DeClump.deClumpGUI
    PYME.Analysis.points.DeClump.pyDeClump
    PYME.Analysis.points.DeClump.setup
    PYME.Analysis.points.DeClump.testClump
    PYME.Analysis.points.DistHist
    PYME.Analysis.points.DistHist.setup
    PYME.Analysis.points.EdgeDB
    PYME.Analysis.points.EdgeDB.edges
    PYME.Analysis.points.EdgeDB.edgeTest
    PYME.Analysis.points.EdgeDB.segment
    PYME.Analysis.points.EdgeDB.setup
    PYME.Analysis.points.multiview
    PYME.Analysis.points.QuadTree
    PYME.Analysis.points.QuadTree.pointQT
    PYME.Analysis.points.QuadTree.pointQTF
    PYME.Analysis.points.QuadTree.QTrend
    PYME.Analysis.points.QuadTree.qtUtils
    PYME.Analysis.points.QuadTree.rendQT
    PYME.Analysis.points.setup
    PYME.Analysis.points.SoftRend
    PYME.Analysis.points.SoftRend.setup
    PYME.Analysis.points.SoftRend.testTetrahedra
    PYME.Analysis.points.twoColour
    PYME.Analysis.points.twoColourPlot
    PYME.Analysis.processLogger
    PYME.Analysis.PSFEst
    PYME.Analysis.PSFEst.dec
    PYME.Analysis.PSFEst.extractImages
    PYME.Analysis.PSFEst.psfQuality
    PYME.Analysis.PSFGen
    PYME.Analysis.PSFGen.fourier
    PYME.Analysis.PSFGen.fourierHNA
    PYME.Analysis.PSFGen.genCRBcurves
    PYME.Analysis.PSFGen.nijboer_zernike
    PYME.Analysis.PSFGen.setup
    PYME.Analysis.PSFGen.test_ps_app
    PYME.Analysis.setup
    PYME.Analysis.svmSegment
    PYME.Analysis.tCluster
    PYME.Analysis.thresholding
    PYME.Analysis.Tracking
    PYME.Analysis.Tracking.msd
    PYME.Analysis.Tracking.tracking
    PYME.Analysis.Tracking.trackUtils
    PYME.config
    PYME.contrib
    PYME.contrib.aniso
    PYME.contrib.aniso.aniso
    PYME.contrib.auiFloatBook
    PYME.contrib.congrid
    PYME.contrib.gohlke
    PYME.contrib.gohlke.czifile
    PYME.contrib.gohlke.fcsfiles
    PYME.contrib.gohlke.setup
    PYME.contrib.gohlke.tifffile
    PYME.contrib.listctrlMixins
    PYME.contrib.lzw
    PYME.contrib.pad
    PYME.contrib.pad.info_pad
    PYME.contrib.pad.pad
    PYME.contrib.setup
    PYME.contrib.TextCtrlAutoComplete
    PYME.contrib.wxPlotPanel
    PYME.dataBrowser
    PYME.dataBrowser.dirView
    PYME.dataBrowser.open
    PYME.dataBrowser.settings
    PYME.dataBrowser.thumbnails
    PYME.Deconv
    PYME.Deconv.beadGen
    PYME.Deconv.dec
    PYME.Deconv.dec_test
    PYME.Deconv.deccs
    PYME.Deconv.deccs2
    PYME.Deconv.deccs_mc
    PYME.Deconv.deconvDialogs
    PYME.Deconv.decTask
    PYME.Deconv.decThread
    PYME.Deconv.fftwWisdom
    PYME.Deconv.read_kdf
    PYME.Deconv.richardsonLucy
    PYME.Deconv.richardsonLucyMV
    PYME.Deconv.richardsonLucyMVM
    PYME.Deconv.test_block_dec
    PYME.Deconv.tq_block_dec
    PYME.Deconv.wiener
    PYME.Deconv.write_kdf
    PYME.DSView
    PYME.DSView.arrayViewPanel
    PYME.DSView.displayOptions
    PYME.DSView.DisplayOptionsPanel
    PYME.DSView.displaySettingsPanel
    PYME.DSView.dsviewer
    PYME.DSView.eventLogViewer
    PYME.DSView.fitInfo
    PYME.DSView.htmlServe
    PYME.DSView.logparser
    PYME.DSView.LUT
    PYME.DSView.LUT.setup
    PYME.DSView.LUT.test_lut
    PYME.DSView.modules
    PYME.DSView.modules.arrayView
    PYME.DSView.modules.blobFinding
    PYME.DSView.modules.blobMeasure
    PYME.DSView.modules.coloc
    PYME.DSView.modules.composite
    PYME.DSView.modules.cropping
    PYME.DSView.modules.deconvolution
    PYME.DSView.modules.eventView
    PYME.DSView.modules.extractBlobs
    PYME.DSView.modules.fastGraphPanel
    PYME.DSView.modules.filtering
    PYME.DSView.modules.flowView
    PYME.DSView.modules.fourierRingCorrelation
    PYME.DSView.modules.graphViewPanel
    PYME.DSView.modules.LMAnalysis
    PYME.DSView.modules.manualSegment
    PYME.DSView.modules.measure
    PYME.DSView.modules.measure.filterPan
    PYME.DSView.modules.metadataView
    PYME.DSView.modules.multithreshold
    PYME.DSView.modules.particleTracking
    PYME.DSView.modules.playback
    PYME.DSView.modules.prebleachExtraction
    PYME.DSView.modules.profileFitting
    PYME.DSView.modules.profilePlotting
    PYME.DSView.modules.psfExtraction
    PYME.DSView.modules.pupilView
    PYME.DSView.modules.recipes
    PYME.DSView.modules.segmentation
    PYME.DSView.modules.sheetView
    PYME.DSView.modules.shell
    PYME.DSView.modules.sparkprepare
    PYME.DSView.modules.splitter
    PYME.DSView.modules.squiggleTools
    PYME.DSView.modules.svmLabel
    PYME.DSView.modules.synchronise
    PYME.DSView.modules.tiling
    PYME.DSView.modules.unmixing
    PYME.DSView.modules.vis3D
    PYME.DSView.modules.visgui
    PYME.DSView.modules.webview
    PYME.DSView.overlays
    PYME.DSView.OverlaysPanel
    PYME.DSView.scrolledImagePanel
    PYME.DSView.setup
    PYME.DSView.splashScreen
    PYME.DSView.voxSizeDialog
    PYME.IO
    PYME.IO.clusterDuplication
    PYME.IO.clusterExport
    PYME.IO.clusterIO
    PYME.IO.clusterResults
    PYME.IO.dataExporter
    PYME.IO.DataSources
    PYME.IO.DataSources.AlignDataSource
    PYME.IO.DataSources.BaseDataSource
    PYME.IO.DataSources.BGSDataSource
    PYME.IO.DataSources.BioformatsDataSource
    PYME.IO.DataSources.BufferedDataSource
    PYME.IO.DataSources.ClusterPZFDataSource
    PYME.IO.DataSources.DcimgDataSource
    PYME.IO.DataSources.FlatFieldDataSource
    PYME.IO.DataSources.HDFDataSource
    PYME.IO.DataSources.HTTPDataSource
    PYME.IO.DataSources.ImageSeriesDataSource
    PYME.IO.DataSources.MultiviewDataSource
    PYME.IO.DataSources.TiffDataSource
    PYME.IO.DataSources.TQDataSource
    PYME.IO.DataSources.UnsplitDataSource
    PYME.IO.dataWrap
    PYME.IO.dcimg
    PYME.IO.FileUtils
    PYME.IO.FileUtils.compHdf
    PYME.IO.FileUtils.fileID
    PYME.IO.FileUtils.fnlGen
    PYME.IO.FileUtils.freeSpace
    PYME.IO.FileUtils.h5ExFrames
    PYME.IO.FileUtils.h5rToTxt
    PYME.IO.FileUtils.h5ToTiffSeries
    PYME.IO.FileUtils.IJLut
    PYME.IO.FileUtils.nameUtils
    PYME.IO.FileUtils.RawToHdf5
    PYME.IO.FileUtils.readSpeckle
    PYME.IO.FileUtils.readTiff
    PYME.IO.FileUtils.saveTiffStack
    PYME.IO.FileUtils.setup
    PYME.IO.FileUtils.SPAD
    PYME.IO.FileUtils.thumbnailDatabase
    PYME.IO.FileUtils.TiffSeqToHdf5
    PYME.IO.h5rFile
    PYME.IO.image
    PYME.IO.MetaDataHandler
    PYME.IO.PZFFormat
    PYME.IO.setup
    PYME.IO.tabular
    PYME.IO.testClusterSpooling
    PYME.IO.unifiedIO
    PYME.LMVis
    PYME.LMVis.colourFilterGUI
    PYME.LMVis.colourPanel
    PYME.LMVis.displayPane
    PYME.LMVis.dyeRatios
    PYME.LMVis.editFilterDialog
    PYME.LMVis.Extras
    PYME.LMVis.Extras.flagZMotionArtifacts
    PYME.LMVis.Extras.fusionUtils
    PYME.LMVis.Extras.multiviewMapping
    PYME.LMVis.Extras.objectMeasurements
    PYME.LMVis.Extras.particleTracking
    PYME.LMVis.Extras.perFrameVariable
    PYME.LMVis.Extras.photophysics
    PYME.LMVis.Extras.pointSetGeneration
    PYME.LMVis.Extras.setBGImage
    PYME.LMVis.Extras.shiftmapGenerator
    PYME.LMVis.Extras.temperaturePlot
    PYME.LMVis.Extras.vibration
    PYME.LMVis.filterPane
    PYME.LMVis.gen3DTriangs
    PYME.LMVis.genImageDialog
    PYME.LMVis.h5rNoGui
    PYME.LMVis.imageView
    PYME.LMVis.importTextDialog
    PYME.LMVis.objectMeasure
    PYME.LMVis.pipeline
    PYME.LMVis.pipelineView
    PYME.LMVis.pointSettingsPanel
    PYME.LMVis.progGraph
    PYME.LMVis.quadTreeSettings
    PYME.LMVis.renderers
    PYME.LMVis.rendGauss
    PYME.LMVis.segmentLL
    PYME.LMVis.setup
    PYME.LMVis.setup_exe
    PYME.LMVis.statusLog
    PYME.LMVis.tcHist
    PYME.LMVis.triBlobs
    PYME.LMVis.visHelpers
    PYME.LMVis.visHelpersMin
    PYME.LMVis.widefieldify
    PYME.LMVis.workspaceTree
    PYME.localization
    PYME.localization.cInterp
    PYME.localization.cInterp.setup
    PYME.localization.cModels
    PYME.localization.cModels.setup
    PYME.localization.FitFactories
    PYME.localization.FitFactories.AstigGaussFitFR
    PYME.localization.FitFactories.AstigGaussGPUFitFR
    PYME.localization.FitFactories.ConfocCOIR
    PYME.localization.FitFactories.DumbellFitR
    PYME.localization.FitFactories.FFBase
    PYME.localization.FitFactories.fitCommon
    PYME.localization.FitFactories.Gauss3DFitR
    PYME.localization.FitFactories.GaussFitConstrR
    PYME.localization.FitFactories.GaussMultifitLinesR
    PYME.localization.FitFactories.GaussMultifitR
    PYME.localization.FitFactories.GaussMultifitSR
    PYME.localization.FitFactories.InterpFitR
    PYME.localization.FitFactories.InterpFitWFR
    PYME.localization.FitFactories.Interpolators
    PYME.localization.FitFactories.Interpolators.baseInterpolator
    PYME.localization.FitFactories.Interpolators.CSInterpolator
    PYME.localization.FitFactories.Interpolators.CubeSInterpolatorP
    PYME.localization.FitFactories.Interpolators.CubicSplineInterpolator
    PYME.localization.FitFactories.Interpolators.LinearInterpolator
    PYME.localization.FitFactories.Interpolators.LinearPInterpolatorP
    PYME.localization.FitFactories.LatFitCOIR
    PYME.localization.FitFactories.LatGaussFitFR
    PYME.localization.FitFactories.LatObjFindFR
    PYME.localization.FitFactories.LatPSFFitR
    PYME.localization.FitFactories.PRInterpFitQR
    PYME.localization.FitFactories.PRInterpFitR
    PYME.localization.FitFactories.SpecGaussFitFR
    PYME.localization.FitFactories.SplitterFitCOIR
    PYME.localization.FitFactories.SplitterFitFNR
    PYME.localization.FitFactories.SplitterFitFusionR
    PYME.localization.FitFactories.SplitterFitInterpBNR
    PYME.localization.FitFactories.SplitterFitInterpNR
    PYME.localization.FitFactories.SplitterMultifitSR
    PYME.localization.FitFactories.SplitterObjFindR
    PYME.localization.FitFactories.SplitterROIExtractNR
    PYME.localization.FitFactories.SplitterShiftEstFR
    PYME.localization.FitFactories.zEstimators
    PYME.localization.FitFactories.zEstimators.astigEstimator
    PYME.localization.FitFactories.zEstimators.biplaneEstimator
    PYME.localization.FitFactories.zEstimators.priEstimator
    PYME.localization.lev_gfit
    PYME.localization.lev_gfit.setup
    PYME.localization.MetaDataEdit
    PYME.localization.ofind
    PYME.localization.ofind3d
    PYME.localization.ofind_nofilt
    PYME.localization.ofind_pri
    PYME.localization.ofind_split
    PYME.localization.ofind_xcorr
    PYME.localization.ofind_xcorr_fw
    PYME.localization.remFitBuf
    PYME.localization.setup
    PYME.localization.Test
    PYME.localization.Test.fitTestJig
    PYME.localization.Test.fitTestJigSCMOS
    PYME.localization.Test.fitTestJigWC
    PYME.localization.twist
    PYME.misc
    PYME.misc.aniso
    PYME.misc.colorsys
    PYME.misc.computerName
    PYME.misc.coverslipGeometries
    PYME.misc.cython_numpy_monkey
    PYME.misc.depGraph
    PYME.misc.dirSize
    PYME.misc.diskCleanup
    PYME.misc.djangoRecarray
    PYME.misc.editgrid
    PYME.misc.eventSpy
    PYME.misc.extraCMaps
    PYME.misc.facsPlot
    PYME.misc.fbpIcons
    PYME.misc.findCycles
    PYME.misc.glassModel
    PYME.misc.hash32
    PYME.misc.kdFit
    PYME.misc.locate
    PYME.misc.memUsage
    PYME.misc.mock_ctypes
    PYME.misc.mock_traitsui
    PYME.misc.pyme_zeroconf
    PYME.misc.pyro_tracebacks
    PYME.misc.read_agf
    PYME.misc.sffake
    PYME.misc.snells
    PYME.misc.sqlitendarray
    PYME.misc.startCommentify
    PYME.misc.tempLogger
    PYME.misc.tempMonitor
    PYME.misc.TiffImagePlugin
    PYME.misc.TiSettings
    PYME.misc.wxThread
    PYME.misc.zemax
    PYME.misc.zernike
    PYME.ParallelTasks
    PYME.ParallelTasks.dataserver_wsgi
    PYME.ParallelTasks.distribution
    PYME.ParallelTasks.distributor
    PYME.ParallelTasks.DSTaskQueue
    PYME.ParallelTasks.fitMon
    PYME.ParallelTasks.fitMonP
    PYME.ParallelTasks.HDFTaskQueue
    PYME.ParallelTasks.HTTPDataServer
    PYME.ParallelTasks.httpSpoolTarget
    PYME.ParallelTasks.HTTPTaskPusher
    PYME.ParallelTasks.launchWorkers
    PYME.ParallelTasks.nodeserver
    PYME.ParallelTasks.PYMEDistributor
    PYME.ParallelTasks.PYMENodeServer
    PYME.ParallelTasks.setup_exe
    PYME.ParallelTasks.taskDef
    PYME.ParallelTasks.taskQueue
    PYME.ParallelTasks.taskServerZC
    PYME.ParallelTasks.taskWorkerHTTP
    PYME.ParallelTasks.taskWorkerZC
    PYME.ParallelTasks.webframework
    PYME.recipes
    PYME.recipes.bakeshop
    PYME.recipes.base
    PYME.recipes.batchProcess
    PYME.recipes.filters
    PYME.recipes.measurement
    PYME.recipes.modules
    PYME.recipes.processing
    PYME.recipes.recipeGui
    PYME.recipes.recipeLayout
    PYME.recipes.runRecipe
    PYME.recipes.skfilters
    PYME.recipes.tablefilters
    PYME.recipes.tracking
    PYME.resources
    PYME.resources.setup
    PYME.setup
    PYME.setup_exe
    PYME.ui
    PYME.ui.AUIFrame
    PYME.ui.autoFoldPanel
    PYME.ui.editList
    PYME.ui.fastGraph
    PYME.ui.histLimits
    PYME.ui.MetadataTree
    PYME.ui.recArrayView
    PYME.update_version
    PYME.util
    PYME.util.fProfile
    PYME.util.fProfile.convertProfile
    PYME.util.fProfile.fProfile
    PYME.util.fProfile.viewProfile
    PYME.util.mProfile
    PYME.util.mProfile.colorize_db_t
    PYME.util.mProfile.mProfile
    PYME.util.mProfile.p
    PYME.util.mProfile.tProfile
    PYME.util.shmarray
    PYME.util.shmarray.shmarray
    PYME.util.shmarray.shmTest
    PYME.version