PYME.Analysis.Colocalisation.correlationCoeffs module¶
- PYME.Analysis.Colocalisation.correlationCoeffs.fourier_ring_correlation(imA, imB, voxelsize=[1.0, 1.0], window=False)¶
- PYME.Analysis.Colocalisation.correlationCoeffs.maskFractions(A, B, tA, tB)¶
- PYME.Analysis.Colocalisation.correlationCoeffs.maskManders(A, B, mA, mB, roi_mask=None)¶
Manders, as practically used with threshold determined masks
like thresholdedManders, but we pass already thresholded masks in to start with
- PYME.Analysis.Colocalisation.correlationCoeffs.mutual_information(X, Y, roi_mask=None, nbins=256, bits=False)¶
- PYME.Analysis.Colocalisation.correlationCoeffs.overlap(X, Y, roi_mask=None)¶
- PYME.Analysis.Colocalisation.correlationCoeffs.pearson(X, Y, roi_mask=None)¶
- PYME.Analysis.Colocalisation.correlationCoeffs.thresholdedManders(A, B, tA, tB, roi_mask=None)¶
Manders, as practically used with threshold determined masks