PYME.Analysis.annealThresh module

PYME.Analysis.annealThresh.annealThresh(image, valP50, valPslope=1, neighP50=4, neighSlope=0.25, mask=None, nIters=10)

segment an image based on both intensity and neighbourbood relationships

PYME.Analysis.annealThresh.annealThresh2(image, valP50, valPslope=1, neighP50=0.5, neighSlope=1, mask=None, nIters=10, out=None)

segment an image based on both intensity and neighbourbood relationships

PYME.Analysis.annealThresh.annealThresh2D(image, valP50, valPslope=1, neighP50=0.5, neighSlope=1, mask=None, nIters=10, out=None)

segment an image based on both intensity and neighbourbood relationships

PYME.Analysis.annealThresh.gen2DMask(nDim)

default mask is a n-dimensional donut around point

PYME.Analysis.annealThresh.genDefaultMask(nDim)

default mask is a n-dimensional donut around point