PYME.Analysis.composite module¶

PYME.Analysis.composite.common_prefix(strings)¶: Find the longest string that is a prefix of all the strings.

PYME.Analysis.composite.make_composite(images, ignoreZ=True, interp=True, shape=None, origin=None, voxelsize=None)¶

Make a composite image from multiple ImageStacks, interpolating if necessary

Parameters

imageslist-like: ImageStack objects to combine, potentially as a list of tuples with the second element being the channel to use, and the third element being a chromatic shift field to apply
ignoreZbool, optional: ignore z origin when combining, by default True
interpbool, optional: whether to interpolate with a cubic spline (True) or linear (False), by default True
shapelist-like, optional: xyztc shape of the composite, if different than the shape of the first image (default, None)
originlist-like, optional: XYZ origin of the composite image, if different than the origin of the first image (default, None)
voxelsizeMetaDataHandler.VoxelSize, optional: voxelsize to construct the composite image, if different than that of the first image (default, None)

Returns

PYME.Analysis.composite.remap_data_2d(image, chan, shape, voxelsize, origin, shiftField=None, ignoreZ=True, order=3)¶: apply a vectorial correction for chromatic shift to an image - this is a generic vectorial shift compensation, rather than the secial case correction used with the splitter.