PYME.DSView.modules.LMAnalysis module

class PYME.DSView.modules.LMAnalysis.AnalysisController(imageMdh=None, tq=None)

Bases: object

pushImages(image)

pushImagesCluster(image)

pushImagesDS(image)

pushImagesHDF(image)

pushImagesQueue(image)

class PYME.DSView.modules.LMAnalysis.AnalysisSettingsView(dsviewer, analysisController, lmanal=None)

Bases: object

DEFAULT_PARAMS = [<PYME.localization.MetaDataEdit.IntParam object>, <PYME.localization.MetaDataEdit.ParamGroup object>, <PYME.localization.MetaDataEdit.ParamGroup object>, <PYME.localization.MetaDataEdit.ParamGroup object>]

FINDING_PARAMS = [<PYME.localization.MetaDataEdit.FloatParam object>, <PYME.localization.MetaDataEdit.IntParam object>]

GenAnalysisPanel(_pnl)

GenPointFindingPanel(_pnl)

OnFitModuleChanged(event)

on_metadata_change(*args, **kwargs)

class PYME.DSView.modules.LMAnalysis.FitDefaults(dsviewer, analysisController)

Bases: object

OnCalibrateSplitter(event)

OnDNAPaint(event)

OnPRI3D(event)

OnSetMapsDefault(event)

OnSplitter2D(event)

OnSplitter3D(event)

OnStandard2D(event)

OnStandard3D(event)

class PYME.DSView.modules.LMAnalysis.LMAnalyser2(dsviewer)

Bases: Plugin

GenFitStatusPanel(_pnl)

GetStatusText()

OnGo(event=None)

OnImagesPushed(**kwargs)

OnTest(event)

OnTestFrame(event)

OnToggleBackground(event)

SetFitInfo()

analysis_refresh_bruteforce()

Refresh points display from cluster-based analysis. This works in the crudest possible way by simply repeatedly re-reading the results file. This should also work for old style analysis, with the same caveats (below) about IO.

WARNING: This has potential performance implications as there wll be significant IO overhead to doing it this way!!!

Files should be closed when spooling is complete.

TODO: - Allow incremental update (as is done in refresh_analysis above). Will probably need modification of PYMEDataServer.

• Stop updates when spooling is complete (HOW? Check file size?)

• What is the effect of the caches in clusterIO? Do we actually get the updated file?

• Make sure this only gets called at a reasonable rate.

• Add logic to call this (and make sure that self.results_filename is defined)

refresh_analysis()

testFrame(gui=True)

toggle_new_style(event=None)

property tq

update(dsviewer)

property use_cluster

PYME.DSView.modules.LMAnalysis.Plug(dsviewer)

PYME.DSView.modules.LMAnalysis.debugPrint(msg)