PYME.LMVis.Extras.pointSetGeneration module

class PYME.LMVis.Extras.pointSetGeneration.Generator(visFr=None)

Bases: HasTraits

OnConfigure(event)

OnGenEvents(event)

OnGenPoints(event)

OnSavePoints(event)

backgroundIntensity = <PYME.misc.mock_traits.Float object>

default_traits_view()

helpInfo = {'backgroundIntensity': '\nThe background intensity per pixel in units of photons, typically in the range from a few tens to hundreds of photons.\n', 'meanDuration': '\nThe mean duration of events which is specified in units of frames.\n', 'meanEventNumber': '\nThis parameter specifies the mean number of times an event occurs at a single marker location.\n', 'meanIntensity': '\nThis parameter specifies the mean number of photons in an event.\nTypically values are in the range from 100 to several 10000.\n', 'meanTime': "\nThis parameter, the mean time of the series in frame units, is the average time at which you expect to get events\n(i.e. the value of np.mean(pipeline['t']) for the simulated set of events). Since STORM mode draws event times from\nan exponential distribution, PAINT from a uniform one, it can also be related to the resulting apparent series duration,\nwhich may be more familar to experimentally minded users. For PAINT mode it works out as half the duration of the series,\nfor STORM simulation mode the relationship is a little more complex,\nyou can work it out from the decay time of an exponential distribution.\n", 'mode': '\nWith the simulation mode you can choose between STORM or PAINT mode.\nThis parameter effects how event rate changes with time (it stays constant in PAINT mode).\n', 'scaleFactor': '\nThis parameter is related to the size of the PSF for purposes of thresholding\n(used in combination with the background intensity, which is per pixel).\nThere should be no need to modify this from the default and it is accordingly not exposed in the view.\n \n', 'source': '\nSelect the type of point source to generate points.\nA wormlike source, an image based source and a file based source are supported.\n'}

helpStr(name)

meanDuration = <PYME.misc.mock_traits.Float object>

meanEventNumber = <PYME.misc.mock_traits.Float object>

meanIntensity = <PYME.misc.mock_traits.Float object>

meanTime = <PYME.misc.mock_traits.Float object>

mode = <PYME.misc.mock_traits.CStr object>

scaleFactor = <PYME.misc.mock_traits.Float object>

source = <PYME.misc.mock_traits.CStr object>

sources = <PYME.misc.mock_traits.List object>

PYME.LMVis.Extras.pointSetGeneration.Plug(visFr)

Plugs this module into the gui