PYME.Analysis.BleachProfile.intensProf module

PYME.Analysis.BleachProfile.intensProf.bf_int(func, lb, ub, *args, **kwargs)
PYME.Analysis.BleachProfile.intensProf.calcProf(fn_list)
PYME.Analysis.BleachProfile.intensProf.calcTs(prof, thresh)
PYME.Analysis.BleachProfile.intensProf.dNdfcn(t, t0, No0, Nd0, ado)

Function to calculate number of fluorophores in dark state when laser is off.

PYME.Analysis.BleachProfile.intensProf.dNofcn(t, t0, No0, Nd0, ado)

Function to calculate number of fluorophores in on state when laser is off.

PYME.Analysis.BleachProfile.intensProf.decmod_onestate(p, t)
PYME.Analysis.BleachProfile.intensProf.doTraceDisp(prof, lOn, dt)
PYME.Analysis.BleachProfile.intensProf.doTraceDispdl(prof, lOn, dt, Ton, Toff, Ibefore, Iafter, r)
PYME.Analysis.BleachProfile.intensProf.doTraceDispdl2(prof, lOn, dt, Ton, Toff, Ibefore, Iafter, r, ipm, dt_ipm, dat, slx, sly, slt_init, slt_ss)
PYME.Analysis.BleachProfile.intensProf.eMod(p, t)
PYME.Analysis.BleachProfile.intensProf.eMod2(p, t)
PYME.Analysis.BleachProfile.intensProf.eMod3(p, t)
PYME.Analysis.BleachProfile.intensProf.eMod4(p, t)
PYME.Analysis.BleachProfile.intensProf.eMod5(p, t)
PYME.Analysis.BleachProfile.intensProf.eth_mod2(p, t)
PYME.Analysis.BleachProfile.intensProf.eth_mod3(p, t)
PYME.Analysis.BleachProfile.intensProf.ethet3(theta, t, aod, ado, aob)
PYME.Analysis.BleachProfile.intensProf.genTraces(Ton, Toff, No0, Nd0, aod, aob, ado, dt, len_trace)
PYME.Analysis.BleachProfile.intensProf.genTracesDE(Ton, Toff, No0, Nd0, aod, aob, ado, pow, dt, len_trace)
PYME.Analysis.BleachProfile.intensProf.gt(theta, ot, offt, No, Nd, aod, aob, ado, dt, l)
PYME.Analysis.BleachProfile.intensProf.gt_mod(p, t, ot, offt, dt)
PYME.Analysis.BleachProfile.intensProf.lNdfcn(t, t0, No0, Nd0, aod, aob, ado)

Function to calculate number of fluorophores in dark state when laser is on.

PYME.Analysis.BleachProfile.intensProf.lNdfcnDE(t, t0, No0, Nd0, aod, aob, ado, pow)

Function to calculate number of fluorophores in dark state when laser is on.

PYME.Analysis.BleachProfile.intensProf.lNofcn(t, t0, No0, Nd0, aod, aob, ado)

Function to calculate number of fluorophores in on state when laser is on.

PYME.Analysis.BleachProfile.intensProf.lNofcnDE(t, t0, No0, Nd0, aod, aob, ado, pow)

Function to calculate number of fluorophores in on state when laser is on.

PYME.Analysis.BleachProfile.intensProf.mod1pk(p, t, pow=2, sc=1, bg=0, No0=1, Nd0=0)
PYME.Analysis.BleachProfile.intensProf.pkmod_onestate(p, t)
PYME.Analysis.BleachProfile.intensProf.recolor(obj, col)
PYME.Analysis.BleachProfile.intensProf.traceModel(p, Ton, Toff, dt, len_trace)

Trace model for fitting

PYME.Analysis.BleachProfile.intensProf.traceModelDE(p, Ton, Toff, t, lOn)
PYME.Analysis.BleachProfile.intensProf.traceModelDE1(p, Ton, Toff, dt, len_trace, sc)

Trace model for fitting