PYME.Analysis.Tracking.trackUtils module

class PYME.Analysis.Tracking.trackUtils.Clump(pipeline, clumpID)

Bases: object

Attributes

dtypes
varnames

Methods

keys()
save(filename[, keys])
dtypes
keys()
save(filename, keys=None)
varnames
class PYME.Analysis.Tracking.trackUtils.ClumpManager(pipeline)

Bases: object

Attributes

all
all
class PYME.Analysis.Tracking.trackUtils.FeatureMean(clump)

Bases: object

class PYME.Analysis.Tracking.trackUtils.FeaturePlot(clump)

Bases: object

class PYME.Analysis.Tracking.trackUtils.FeatureStd(clump)

Bases: object

PYME.Analysis.Tracking.trackUtils.FitJumpSizeDist(velocities, startParams, dT)
class PYME.Analysis.Tracking.trackUtils.Track(pipeline, clumpID)

Bases: PYME.Analysis.Tracking.trackUtils.Clump

Attributes

distance
dtypes
movieplot
msdinfo
msdplot
trajectory
varnames

Methods

keys()
save(filename[, keys])
distance
movieplot
msdinfo
msdplot
trajectory
class PYME.Analysis.Tracking.trackUtils.TrackManager(trackList)

Bases: object

Attributes

all
filtered
all
filtered
PYME.Analysis.Tracking.trackUtils.calcTrackVelocity(x, y, ci, t)
PYME.Analysis.Tracking.trackUtils.findTracks(pipeline, rad_var='error_x', multiplier='2.0', nFrames=20)
PYME.Analysis.Tracking.trackUtils.jumpDistModel(p, r, N, t, dx)
PYME.Analysis.Tracking.trackUtils.jumpDistProb(r, D, t)
PYME.Analysis.Tracking.trackUtils.powerMod2D(p, t)