Index

A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | Q | R | S | T | U | V | W | X | Y | Z

A

A() (PYME.localization.FitFactories.Gauss3DFitR.GaussFitResult method)
(PYME.localization.FitFactories.LatPSFFitR.PSFFitResult method)
A0 (PYME.DSView.modules.blobMeasure.DataBlock attribute)
A1 (PYME.DSView.modules.blobMeasure.DataBlock attribute)
A2 (PYME.DSView.modules.blobMeasure.DataBlock attribute)
acquire() (PYME.ParallelTasks.HDFTaskQueue.myLock method)
ACTION_POSITION (PYME.DSView.displayOptions.DisplayOpts attribute)
ACTION_SELECTION (PYME.DSView.displayOptions.DisplayOpts attribute)
ActionList (class in PYME.Acquire.ui.actionUI)
ActionManager (class in PYME.Acquire.ActionManager)
ActionPanel (class in PYME.Acquire.ui.actionUI)
adapt_numarray() (in module PYME.IO.FileUtils.thumbnailDatabase)
(in module PYME.misc.sqlitendarray)
Add (class in PYME.recipes.base)
add_base_tile() (PYME.Analysis.deTile.ImagePyramid method)
add_module() (PYME.recipes.base.ModuleCollection method)
add_service() (PYME.misc.pyme_zeroconf.ZCListener method)
AddAqTool() (PYME.Acquire.acquiremainframe.PYMEMainFrame method)
AddCamTool() (PYME.Acquire.acquiremainframe.PYMEMainFrame method)
addColumn() (PYME.IO.tabular.mappingFilter method)
(PYME.LMVis.pipeline.Pipeline method)
addDataSource() (PYME.LMVis.pipeline.Pipeline method)
AddElement() (PYME.ui.autoFoldPanel.foldingPane method)
addEntries() (PYME.ui.MetadataTree.MetadataPanel method)
addEvents() (PYME.IO.h5rFile.H5RFile method)
addFrame() (PYME.Analysis.buffers.bgFrameBuffer method)
(PYME.IO.DataSources.BGSDataSource.bgFrameBuffer method)
additionalDims (PYME.IO.DataSources.BaseDataSource.BaseDataSource attribute)
addKey() (PYME.LMVis.workspaceTree.WorkWrap method)
AddMenuItem() (PYME.ui.AUIFrame.AUIFrame method)
AddMetadataToMeasurements (class in PYME.recipes.measurement)
AddNewElement() (PYME.ui.autoFoldPanel.foldingPane method)
AddPage() (PYME.ui.AUIFrame.AUIFrame method)
AddPane() (PYME.ui.autoFoldPanel.foldPanel method)
addQueueEvents() (PYME.ParallelTasks.HDFTaskQueue.HDFResultsTaskQueue method)
(PYME.ParallelTasks.taskServerZC.TaskQueueSet method)
AddRecord() (PYME.Analysis.processLogger.BackendBase method)
(PYME.Analysis.processLogger.ContextLayer method)
(PYME.Analysis.processLogger.ContextManager method)
(PYME.Analysis.processLogger.TablesBackend method)
AddSlice() (PYME.IO.FileUtils.saveTiffStack.TiffMP method)
AddTool() (PYME.Acquire.acquiremainframe.PYMEMainFrame method)
addVariable() (PYME.IO.tabular.mappingFilter method)
AddVoxelSizeSetting() (PYME.Acquire.microscope.microscope method)
af() (PYME.Acquire.autofocus.AutoFocus method)
afterPopupMenu() (PYME.contrib.listctrlMixins.ListCtrlSelectionManagerMix method)
Afunc() (PYME.Analysis.PSFEst.dec.dec_psf method)
(PYME.Deconv.dec.dec_4pi method)
(PYME.Deconv.dec.dec_4pi_c method)
(PYME.Deconv.dec.dec_bead method)
(PYME.Deconv.dec.dec_conv method)
(PYME.Deconv.deccs.dec_bead method)
(PYME.Deconv.deccs.dec_conv method)
(PYME.Deconv.deccs.dec_gauss method)
(PYME.Deconv.deccs2.dec_bead method)
(PYME.Deconv.deccs2.dec_conv method)
(PYME.Deconv.deccs2.dec_gauss method)
(PYME.Deconv.deccs2.dec_sparse method)
(PYME.Deconv.deccs2.dec_subsamp method)
(PYME.Deconv.deccs_mc.dec_bead method)
(PYME.Deconv.deccs_mc.dec_conv method)
(PYME.Deconv.deccs_mc.dec_gauss method)
(PYME.Deconv.richardsonLucy.dec_conv method)
(PYME.Deconv.richardsonLucy.dec_conv_slow method)
(PYME.Deconv.richardsonLucy.rlbead method)
(PYME.Deconv.richardsonLucyMV.dec_conv method)
(PYME.Deconv.richardsonLucyMV.dec_conv_slow method)
(PYME.Deconv.richardsonLucyMV.rlbead method)
(PYME.Deconv.richardsonLucyMVM.dec_conv method)
(PYME.Deconv.richardsonLucyMVM.dec_conv_slow method)
(PYME.Deconv.richardsonLucyMVM.rlbead method)
AggregateMeasurements (class in PYME.recipes.tablefilters)
Ahfunc() (PYME.Analysis.PSFEst.dec.dec_psf method)
(PYME.Deconv.dec.dec_4pi method)
(PYME.Deconv.dec.dec_4pi_c method)
(PYME.Deconv.dec.dec_bead method)
(PYME.Deconv.dec.dec_conv method)
(PYME.Deconv.deccs.dec_bead method)
(PYME.Deconv.deccs.dec_conv method)
(PYME.Deconv.deccs.dec_gauss method)
(PYME.Deconv.deccs2.dec_bead method)
(PYME.Deconv.deccs2.dec_conv method)
(PYME.Deconv.deccs2.dec_gauss method)
(PYME.Deconv.deccs2.dec_sparse method)
(PYME.Deconv.deccs2.dec_subsamp method)
(PYME.Deconv.deccs_mc.dec_bead method)
(PYME.Deconv.deccs_mc.dec_conv method)
(PYME.Deconv.deccs_mc.dec_gauss method)
(PYME.Deconv.richardsonLucy.dec_conv method)
(PYME.Deconv.richardsonLucy.dec_conv_slow method)
(PYME.Deconv.richardsonLucy.rlbead method)
(PYME.Deconv.richardsonLucyMV.dec_conv method)
(PYME.Deconv.richardsonLucyMV.dec_conv_slow method)
(PYME.Deconv.richardsonLucyMV.rlbead method)
(PYME.Deconv.richardsonLucyMVM.dec_conv method)
(PYME.Deconv.richardsonLucyMVM.dec_conv_slow method)
(PYME.Deconv.richardsonLucyMVM.rlbead method)
Ahfuncs() (PYME.Deconv.deccs2.dec_conv method)
(PYME.Deconv.deccs2.dec_sparse method)
(PYME.Deconv.deccs2.dec_subsamp method)
all (PYME.Analysis.Tracking.trackUtils.ClumpManager attribute)
(PYME.Analysis.Tracking.trackUtils.TrackManager attribute)
allmodules() (in module PYME.DSView.modules)
analRefresh() (PYME.DSView.modules.LMAnalysis.LMAnalyser2 method)
analyseFile() (in module PYME.Analysis.Auto.auto_drift_render)
(in module PYME.Analysis.Auto.auto_photophysics)
AnalysisController (class in PYME.DSView.modules.LMAnalysis)
AnalysisDetailsPanel (class in PYME.Acquire.ui.AnalysisSettingsUI)
AnalysisSettings (class in PYME.Acquire.ui.AnalysisSettingsUI)
AnalysisSettingsPanel (class in PYME.Acquire.ui.AnalysisSettingsUI)
AnalysisSettingsView (class in PYME.DSView.modules.LMAnalysis)
angHist() (in module PYME.Analysis.angleFilter)
angHist2() (in module PYME.Analysis.angleFilter)
angle_filter() (in module PYME.Analysis.angleFilter)
angle_filter_m() (in module PYME.Analysis.angleFilter)
angularDist() (PYME.DSView.modules.blobMeasure.BlobObject method)
aniso() (in module PYME.misc.aniso)
anisodiff() (in module PYME.contrib.aniso.aniso)
anisodiff3() (in module PYME.contrib.aniso.aniso)
annealThresh() (in module PYME.Analysis.annealThresh)
annealThresh2() (in module PYME.Analysis.annealThresh)
annealThresh2D() (in module PYME.Analysis.annealThresh)
announce() (PYME.ParallelTasks.distributor.CPDistributor method)
APIHTTPServer (class in PYME.ParallelTasks.webframework)
append() (PYME.DSView.displayOptions.MyWeakSet method)
Append() (PYME.DSView.modules.composite.ImageList method)
appendToTable() (PYME.IO.h5rFile.H5RFile method)
applyByChannel() (in module PYME.Analysis.BleachProfile.kinModels)
applyFilter() (PYME.recipes.base.Add method)
(PYME.recipes.base.BinaryOr method)
(PYME.recipes.base.Divide method)
(PYME.recipes.base.Invert method)
(PYME.recipes.base.Multiply method)
(PYME.recipes.base.Normalize method)
(PYME.recipes.base.NormalizeMean method)
(PYME.recipes.base.Scale method)
(PYME.recipes.base.Subtract method)
(PYME.recipes.filters.DespeckleFilter method)
(PYME.recipes.filters.DoGFilter method)
(PYME.recipes.filters.GaussianFilter method)
(PYME.recipes.filters.MaskEdges method)
(PYME.recipes.filters.MeanFilter method)
(PYME.recipes.filters.MedianFilter method)
(PYME.recipes.filters.Zoom method)
(PYME.recipes.processing.BinaryDilation method)
(PYME.recipes.processing.BinaryErosion method)
(PYME.recipes.processing.BinaryFillHoles method)
(PYME.recipes.processing.Deconvolve method)
(PYME.recipes.processing.DeconvolveMotionCompensating method)
(PYME.recipes.processing.DistanceTransform method)
(PYME.recipes.processing.FractionalThreshold method)
(PYME.recipes.processing.GreyDilation method)
(PYME.recipes.processing.GreyErosion method)
(PYME.recipes.processing.Label method)
(PYME.recipes.processing.LocalMaxima method)
(PYME.recipes.processing.SelectLabel method)
(PYME.recipes.processing.SimpleThreshold method)
(PYME.recipes.processing.Watershed method)
(PYME.recipes.processing.WhiteTophat method)
(PYME.recipes.skfilters.SKFilter method)
applyLUT() (in module PYME.DSView.LUT)
applyShiftmaps() (in module PYME.Analysis.points.multiview)
ArithmaticFilter (class in PYME.recipes.base)
arrangeNodes() (in module PYME.misc.depGraph)
arrangeNodes_() (in module PYME.misc.depGraph)
ArraySettingsAndViewPanel (class in PYME.DSView.arrayViewPanel)
ArrayViewPanel (class in PYME.DSView.arrayViewPanel)
asarray() (PYME.contrib.gohlke.czifile.CziFile method)
(PYME.contrib.gohlke.fcsfiles.ConfoCor2Raw method)
(PYME.contrib.gohlke.fcsfiles.ConfoCor3Raw method)
(PYME.contrib.gohlke.tifffile.TIFFfile method)
ASF() (in module PYME.misc.snells)
assert_leader() (PYME.IO.clusterDuplication.DupManager method)
attachment_directory (PYME.contrib.gohlke.czifile.CziFile attribute)
attachments() (PYME.contrib.gohlke.czifile.CziFile method)
attempt_dup() (PYME.IO.clusterDuplication.DupManager method)
AUIFrame (class in PYME.ui.AUIFrame)
AuiNotebookWithFloatingPages (class in PYME.contrib.auiFloatBook)
AutoFocus (class in PYME.Acquire.autofocus)
autostart_analysis (PYME.Acquire.SpoolController.SpoolController attribute)
AutoWidthListCtrl (class in PYME.Acquire.sampleInformation)
averageNormals() (in module PYME.LMVis.gen3DTriangs)
averageNormalsF() (in module PYME.LMVis.gen3DTriangs)
axes (PYME.contrib.gohlke.czifile.CziFile attribute)

B

BackendBase (class in PYME.Analysis.processLogger)
background() (in module PYME.Analysis.PSFEst.psfQuality)
(PYME.localization.FitFactories.Gauss3DFitR.GaussFitResult method)
(PYME.localization.FitFactories.LatPSFFitR.PSFFitResult method)
backgroundBuffer (class in PYME.Analysis.buffers)
(class in PYME.IO.DataSources.BGSDataSource)
backgroundBufferM (class in PYME.Analysis.buffers)
(class in PYME.IO.DataSources.BGSDataSource)
backgroundCorrectPSFWF() (in module PYME.Analysis.PSFEst.extractImages)
BACKWARDS (PYME.Acquire.stackSettings.StackSettings attribute)
bake() (in module PYME.recipes.batchProcess)
BakeshopApp (class in PYME.recipes.bakeshop)
bandwidthTesting (PYME.ParallelTasks.dataserver_wsgi.dataserver attribute)
(PYME.ParallelTasks.HTTPDataServer.PYMEHTTPRequestHandler attribute)
baseconvert() (in module PYME.IO.FileUtils.nameUtils)
BaseDataSource (class in PYME.IO.DataSources.BaseDataSource)
BatchFrame (class in PYME.recipes.recipeGui)
bbox (PYME.DSView.modules.blobMeasure.DataBlock attribute)
beta() (in module PYME.Analysis.multicolourMeta)
(in module PYME.Analysis.points.DeClump.deClumpGUI)
(in module PYME.Analysis.points.EdgeDB.edgeTest)
(in module PYME.Analysis.points.QuadTree)
(in module PYME.Analysis.points.QuadTree.QTrend)
(in module PYME.Analysis.points.QuadTree.rendQT)
(in module PYME.Analysis.points.twoColourPlot)
(in module PYME.Deconv.deccs_mc)
(in module PYME.localization.FitFactories.SplitterObjFindR)
(in module PYME.localization.FitFactories.SplitterShiftEstFR)
(in module PYME.localization.Test.fitTestJig)
(in module PYME.localization.Test.fitTestJigWC)
(in module PYME.localization.twist)
(in module PYME.misc.aniso)
(in module PYME.misc.facsPlot)
(in module PYME.misc.kdFit)
bf_int() (in module PYME.Analysis.BleachProfile.intensProf)
bgFrameBuffer (class in PYME.Analysis.buffers)
(class in PYME.IO.DataSources.BGSDataSource)
BGInitTask (class in PYME.Acquire.ExecTools)
BinaryDilation (class in PYME.recipes.processing)
BinaryErosion (class in PYME.recipes.processing)
BinaryFillHoles (class in PYME.recipes.processing)
BinaryOr (class in PYME.recipes.base)
binAvg() (in module PYME.Analysis.binAvg)
binMedian() (in module PYME.Analysis.binAvg)
binned_average() (in module PYME.Analysis.binAvg)
binned_median() (in module PYME.Analysis.binAvg)
BinnedHistogram (class in PYME.recipes.measurement)
binomial() (in module PYME.Analysis.multicolourMeta)
(in module PYME.Analysis.points.DeClump.deClumpGUI)
(in module PYME.Analysis.points.EdgeDB.edgeTest)
(in module PYME.Analysis.points.QuadTree)
(in module PYME.Analysis.points.QuadTree.QTrend)
(in module PYME.Analysis.points.QuadTree.rendQT)
(in module PYME.Analysis.points.twoColourPlot)
(in module PYME.Deconv.deccs_mc)
(in module PYME.localization.FitFactories.SplitterObjFindR)
(in module PYME.localization.FitFactories.SplitterShiftEstFR)
(in module PYME.localization.Test.fitTestJig)
(in module PYME.localization.Test.fitTestJigWC)
(in module PYME.localization.twist)
(in module PYME.misc.aniso)
(in module PYME.misc.facsPlot)
(in module PYME.misc.kdFit)
BitPacker (class in PYME.contrib.lzw)
bitstobytes() (in module PYME.contrib.lzw)
BitUnpacker (class in PYME.contrib.lzw)
BlankResult() (in module PYME.localization.FitFactories.SplitterFitFNR)
(in module PYME.localization.FitFactories.SplitterFitFusionR)
(in module PYME.localization.FitFactories.SplitterFitInterpBNR)
(in module PYME.localization.FitFactories.SplitterFitInterpNR)
blobFinder (class in PYME.DSView.modules.blobFinding)
blobify() (in module PYME.LMVis.gen3DTriangs)
blobify2D() (in module PYME.LMVis.gen3DTriangs)
BlobObject (class in PYME.DSView.modules.blobMeasure)
BlobSettings (class in PYME.LMVis.triBlobs)
BlobSettingsPanel (class in PYME.LMVis.triBlobs)
blockify() (PYME.Deconv.tq_block_dec.blocking_deconv method)
blocking_deconv (class in PYME.Deconv.tq_block_dec)
BoaApp (class in PYME.Acquire.PYMEAcquire)
BoolFloatParam (class in PYME.localization.MetaDataEdit)
BoolParam (class in PYME.localization.MetaDataEdit)
bounds (PYME.IO.image.ImageBounds attribute)
BufferManager (class in PYME.localization.remFitBuf)
build_call_tree_threads() (in module PYME.util.fProfile.convertProfile)
ByteDecoder (class in PYME.contrib.lzw)
ByteEncoder (class in PYME.contrib.lzw)
bytestobits() (in module PYME.contrib.lzw)

C

C (in module PYME.Acquire.protocol)
c_mul() (in module PYME.misc.hash32)
CachingMDHandler (class in PYME.IO.MetaDataHandler)
cachingResultsFilter (class in PYME.IO.tabular)
calc_flow() (PYME.recipes.processing.OpticalFlow method)
calc_gauss_weights() (in module PYME.Deconv.deccs)
(in module PYME.Deconv.deccs2)
(in module PYME.Deconv.deccs_mc)
(in module PYME.localization.ofind)
(in module PYME.localization.ofind_pri)
(in module PYME.localization.ofind_split)
calc_grad() (PYME.recipes.processing.DirectionToMask3D method)
(PYME.recipes.processing.Gradient2D method)
(PYME.recipes.processing.Gradient3D method)
calc_proj() (PYME.recipes.processing.ProjectOnVector method)
calcCenteredMoments() (in module PYME.Analysis.moments)
calcCoeffs() (in module PYME.misc.zernike)
calcCorrections() (in module PYME.Analysis.points.twoColour)
calcCorrShift() (in module PYME.Analysis.deTile)
CalcCramerRao() (in module PYME.Analysis.cramerRao)
CalcCramerReoZ() (in module PYME.Analysis.cramerRao)
calcDistances() (PYME.Analysis.points.EdgeDB.edges.EdgeDB method)
calcDistCorr() (in module PYME.Analysis.Colocalisation.distColoc)
calcEdgeDists() (in module PYME.LMVis.objectMeasure)
CalcFisherInfoModel() (in module PYME.Analysis.cramerRao)
CalcFisherInform2D() (in module PYME.Analysis.cramerRao)
CalcFisherInformZ() (in module PYME.Analysis.cramerRao)
CalcFisherInformZn() (in module PYME.Analysis.cramerRao)
CalcFisherInformZn2() (in module PYME.Analysis.cramerRao)
CalcImSize() (PYME.DSView.arrayViewPanel.ArrayViewPanel method)
calcLinkageMatrix() (PYME.Analysis.Tracking.tracking.Tracker method)
calcLinkages() (PYME.Analysis.Tracking.tracking.Tracker method)
calcMCCenteredMoments() (in module PYME.Analysis.moments)
calcMeanEdge() (in module PYME.LMVis.gen3DTriangs)
calcMEs() (PYME.localization.Test.fitTestJig.fitTestJig method)
(PYME.localization.Test.fitTestJigSCMOS.fitTestJig method)
(PYME.localization.Test.fitTestJigWC.fitTestJig method)
calcNeighbourDistPart() (in module PYME.LMVis.visHelpers)
calcNeighbourDists() (in module PYME.LMVis.visHelpers)
(in module PYME.LMVis.visHelpersMin)
calcProf() (in module PYME.Analysis.BleachProfile.intensProf)
calcShifts() (in module PYME.Analysis.points.multiview)
calcSigma() (PYME.localization.remFitBuf.fitTask class method)
calcTetVolume() (in module PYME.LMVis.gen3DTriangs)
calcThreshold() (PYME.localization.remFitBuf.fitTask method)
calcTrackVelocity() (in module PYME.Analysis.Tracking.trackUtils)
calcTs() (in module PYME.Analysis.BleachProfile.intensProf)
calcTwist() (in module PYME.localization.twist)
CalcUnscrolledPosition() (PYME.DSView.scrolledImagePanel.ScrolledImagePanel method)
calibrate() (in module PYME.localization.FitFactories.zEstimators.astigEstimator)
(in module PYME.localization.FitFactories.zEstimators.biplaneEstimator)
(in module PYME.localization.FitFactories.zEstimators.priEstimator)
CameraChooserPanel (class in PYME.Acquire.ui.selectCameraPanel)
CameraInfoManager (class in PYME.localization.remFitBuf)
CaptionBar (class in PYME.ui.autoFoldPanel)
Cauchy() (in module PYME.misc.glassModel)
CDLL (class in PYME.misc.mock_ctypes)
center() (PYME.Acquire.zScanner.zScanner method)
CENTRE_AND_LENGTH (PYME.Acquire.stackSettings.StackSettings attribute)
centroid (PYME.DSView.modules.blobMeasure.DataBlock attribute)
centroidNM (PYME.DSView.modules.blobMeasure.DataBlock attribute)
CheckColNames() (PYME.LMVis.importTextDialog.ImportTextDialog method)
checkHardware() (PYME.Acquire.frameWrangler.FrameWrangler method)
CheckItem() (PYME.contrib.listctrlMixins.CheckListCtrlMixin method)
CheckListCtrlMixin (class in PYME.contrib.listctrlMixins)
checkTimeouts() (PYME.ParallelTasks.HDFTaskQueue.HDFResultsTaskQueue method)
(PYME.ParallelTasks.taskQueue.TaskQueue method)
(PYME.ParallelTasks.taskServerZC.TaskQueueSet method)
checkTQ() (PYME.DSView.modules.deconvolution.deconvolver method)
cherrypy_server() (in module PYME.ParallelTasks.dataserver_wsgi)
chi2_mse() (in module PYME.Analysis.BleachProfile.kinModels)
chisquare() (in module PYME.Analysis.multicolourMeta)
(in module PYME.Analysis.points.DeClump.deClumpGUI)
(in module PYME.Analysis.points.EdgeDB.edgeTest)
(in module PYME.Analysis.points.QuadTree)
(in module PYME.Analysis.points.QuadTree.QTrend)
(in module PYME.Analysis.points.QuadTree.rendQT)
(in module PYME.Analysis.points.twoColourPlot)
(in module PYME.Deconv.deccs_mc)
(in module PYME.localization.FitFactories.SplitterObjFindR)
(in module PYME.localization.FitFactories.SplitterShiftEstFR)
(in module PYME.localization.Test.fitTestJig)
(in module PYME.localization.Test.fitTestJigWC)
(in module PYME.localization.twist)
(in module PYME.misc.aniso)
(in module PYME.misc.facsPlot)
(in module PYME.misc.kdFit)
choice() (in module PYME.Analysis.multicolourMeta)
(in module PYME.Analysis.points.DeClump.deClumpGUI)
(in module PYME.Analysis.points.EdgeDB.edgeTest)
(in module PYME.Analysis.points.QuadTree)
(in module PYME.Analysis.points.QuadTree.QTrend)
(in module PYME.Analysis.points.QuadTree.rendQT)
(in module PYME.Analysis.points.twoColourPlot)
(in module PYME.Deconv.deccs_mc)
(in module PYME.localization.FitFactories.SplitterObjFindR)
(in module PYME.localization.FitFactories.SplitterShiftEstFR)
(in module PYME.localization.Test.fitTestJig)
(in module PYME.localization.Test.fitTestJigWC)
(in module PYME.localization.twist)
(in module PYME.misc.aniso)
(in module PYME.misc.facsPlot)
(in module PYME.misc.kdFit)
ChoiceParam (class in PYME.localization.MetaDataEdit)
chromaticShifts (PYME.LMVis.pipeline.Pipeline attribute)
ChunkedHuffmanCompress() (in module PYME.IO.PZFFormat)
ChunkedHuffmanCompress_o() (in module PYME.IO.PZFFormat)
ChunkedHuffmanDecompress() (in module PYME.IO.PZFFormat)
circGeom (class in PYME.misc.coverslipGeometries)
classify() (PYME.Analysis.svmSegment.svmClassifier method)
cleanup() (PYME.Deconv.dec.dec_4pi_c method)
(PYME.ParallelTasks.DSTaskQueue.DSTaskQueue method)
(PYME.ParallelTasks.HDFTaskQueue.HDFResultsTaskQueue method)
(PYME.ParallelTasks.HDFTaskQueue.HDFTaskQueue method)
(PYME.ParallelTasks.HTTPTaskPusher.HTTPTaskPusher method)
(PYME.ParallelTasks.taskQueue.TaskQueue method)
cleanup_cluster() (PYME.Deconv.tq_block_dec.blocking_deconv method)
Clear() (PYME.ui.autoFoldPanel.foldPanel method)
ClearGenerated() (PYME.LMVis.pipeline.Pipeline method)
ClearTrack() (PYME.Acquire.positionTracker.PositionTracker method)
cloneSource (class in PYME.IO.tabular)
close() (PYME.contrib.gohlke.czifile.CziFile method)
(PYME.IO.FileUtils.saveTiffStack.TiffMP method)
(PYME.IO.tabular.fitResultsSource method)
(PYME.IO.tabular.h5rSource method)
(PYME.IO.tabular.hdfSource method)
(PYME.contrib.gohlke.fcsfiles.ConfoCor2Raw method)
(PYME.contrib.gohlke.fcsfiles.ConfoCor3Fcs method)
(PYME.contrib.gohlke.fcsfiles.ConfoCor3Raw method)
(PYME.contrib.gohlke.tifffile.TIFFfile method)
CloseEditor() (PYME.contrib.listctrlMixins.TextEditMixin method)
(PYME.ui.MetadataTree.TextEditMixin method)
CloseFiles() (PYME.LMVis.pipeline.Pipeline method)
Clump (class in PYME.Analysis.Tracking.trackUtils)
ClumpManager (class in PYME.Analysis.Tracking.trackUtils)
cluster() (in module PYME.Analysis.tCluster)
cmp() (in module PYME.contrib.listctrlMixins)
coalesceClumps() (in module PYME.Analysis.points.DeClump.pyDeClump)
coalesceClumps_() (in module PYME.Analysis.points.DeClump.pyDeClump)
coalesceDictSorted() (in module PYME.Analysis.points.multiview)
code_size() (PYME.contrib.lzw.Decoder method)
(PYME.contrib.lzw.Encoder method)
COIFitFactory (class in PYME.localization.FitFactories.LatFitCOIR)
(class in PYME.localization.FitFactories.SplitterFitCOIR)
COIFitResultR() (in module PYME.localization.FitFactories.ConfocCOIR)
(in module PYME.localization.FitFactories.LatFitCOIR)
(in module PYME.localization.FitFactories.SplitterFitCOIR)
collapsingPane (class in PYME.ui.autoFoldPanel)
collectConnected() (in module PYME.Analysis.points.EdgeDB.segment)
(in module PYME.LMVis.gen3DTriangs)
colocaliser (class in PYME.DSView.modules.coloc)
ColocSettingsDialog (class in PYME.DSView.modules.coloc)
(class in PYME.DSView.modules.fourierRingCorrelation)
colorize_file() (in module PYME.util.mProfile.colorize_db_t)
colour() (in module PYME.Analysis.PSFEst.psfQuality)
colourFilter (class in PYME.IO.tabular)
(PYME.LMVis.renderers.CurrentRenderer attribute)
ColourFilterPane (class in PYME.LMVis.colourFilterGUI)
ColourFromStyle() (in module PYME.ui.autoFoldPanel)
ColourImageViewPanel (class in PYME.LMVis.imageView)
colourPanel (class in PYME.LMVis.colourPanel)
colourPlotPanel (class in PYME.LMVis.colourPanel)
ColourRenderer (class in PYME.LMVis.renderers)
ColumnSorterMixin (class in PYME.contrib.listctrlMixins)
common_prefix() (in module PYME.DSView.modules.composite)
compareOriginalWithRec() (in module PYME.Analysis.points.QuadTree.qtUtils)
completeMetadata() (PYME.recipes.base.ArithmaticFilter method)
(PYME.recipes.base.Filter method)
(PYME.recipes.filters.DespeckleFilter method)
(PYME.recipes.filters.DoGFilter method)
(PYME.recipes.filters.GaussianFilter method)
(PYME.recipes.filters.MeanFilter method)
(PYME.recipes.filters.MedianFilter method)
(PYME.recipes.filters.Zoom method)
(PYME.recipes.processing.Deconvolve method)
(PYME.recipes.processing.FractionalThreshold method)
(PYME.recipes.processing.Label method)
(PYME.recipes.processing.LocalMaxima method)
(PYME.recipes.processing.OpticalFlow method)
(PYME.recipes.processing.SelectLabel method)
(PYME.recipes.processing.SimpleThreshold method)
(PYME.recipes.skfilters.SKFilter method)
complexMode (PYME.DSView.displayOptions.DisplayOpts attribute)
CompositeDialog (class in PYME.DSView.modules.composite)
compositor (class in PYME.DSView.modules.composite)
compress() (in module PYME.contrib.lzw)
computeLoop() (PYME.ParallelTasks.taskWorkerHTTP.taskWorker method)
concatenateFilter (class in PYME.IO.tabular)
ConcatenateTables (class in PYME.recipes.tablefilters)
configuration() (in module PYME.Acquire.setup)
(in module PYME.Analysis.PSFGen.setup)
(in module PYME.Analysis.points.DeClump.setup)
(in module PYME.Analysis.points.DistHist.setup)
(in module PYME.Analysis.points.EdgeDB.setup)
(in module PYME.Analysis.points.SoftRend.setup)
(in module PYME.Analysis.points.setup)
(in module PYME.Analysis.setup)
(in module PYME.DSView.LUT.setup)
(in module PYME.DSView.setup)
(in module PYME.IO.FileUtils.setup)
(in module PYME.IO.setup)
(in module PYME.LMVis.setup)
(in module PYME.contrib.gohlke.setup)
(in module PYME.contrib.setup)
(in module PYME.localization.cInterp.setup)
(in module PYME.localization.cModels.setup)
(in module PYME.localization.lev_gfit.setup)
(in module PYME.localization.setup)
(in module PYME.resources.setup)
(in module PYME.setup)
(in module PYME.setup_exe)
configureModule() (PYME.recipes.recipeGui.RecipeView method)
confocal_parser (class in PYME.DSView.logparser)
ConfocCOI() (in module PYME.localization.FitFactories.ConfocCOIR)
ConfoCor2Raw (class in PYME.contrib.gohlke.fcsfiles)
ConfoCor3Fcs (class in PYME.contrib.gohlke.fcsfiles)
ConfoCor3Raw (class in PYME.contrib.gohlke.fcsfiles)
congrid() (in module PYME.contrib.congrid)
ContextLayer (class in PYME.Analysis.processLogger)
ContextManager (class in PYME.Analysis.processLogger)
Controller() (in module PYME.misc.mock_traitsui)
convert() (in module PYME.util.fProfile.convertProfile)
convert_numarray() (in module PYME.IO.FileUtils.thumbnailDatabase)
(in module PYME.misc.sqlitendarray)
convertFile() (in module PYME.IO.FileUtils.h5rToTxt)
(in module PYME.IO.FileUtils.RawToHdf5)
convertFiles() (in module PYME.IO.FileUtils.TiffSeqToHdf5)
copyEntriesFrom() (PYME.Acquire.HTTPHDFSpooler.HttpSpoolMDHandler method)
(PYME.IO.MetaDataHandler.MDHandlerBase method)
(PYME.IO.MetaDataHandler.QueueMDHandler method)
CopyImage() (PYME.DSView.arrayViewPanel.ArrayViewPanel method)
correctImage() (PYME.localization.remFitBuf.CameraInfoManager method)
correlate() (PYME.localization.ofind_xcorr_fw.fftwWeiner method)
corrScale() (in module PYME.Analysis.Colocalisation.colocScaleDep)
CPDistributor (class in PYME.ParallelTasks.distributor)
CPNodeServer (class in PYME.ParallelTasks.nodeserver)
cpuCount() (in module PYME.ParallelTasks.launchWorkers)
crb3d() (in module PYME.Analysis.PSFEst.psfQuality)
create() (in module PYME.Acquire.acquiremainframe)
(in module PYME.Acquire.ui.seqdialog)
(in module PYME.util.shmarray.shmarray)
create_copy() (in module PYME.util.shmarray.shmarray)
create_editor() (PYME.LMVis.Extras.pointSetGeneration.WRDictEnum method)
CreateColourFilterPane() (in module PYME.LMVis.colourFilterGUI)
CreateDisplayPane() (in module PYME.LMVis.displayPane)
CreateFilterPane() (in module PYME.DSView.modules.measure.filterPan)
(in module PYME.LMVis.filterPane)
createFitTaskFromTaskDef() (in module PYME.localization.remFitBuf)
CreateFoldPanel() (PYME.ui.AUIFrame.AUIFrame method)
createGUI() (PYME.localization.MetaDataEdit.BoolFloatParam method)
(PYME.localization.MetaDataEdit.BoolParam method)
(PYME.localization.MetaDataEdit.ChoiceParam method)
(PYME.localization.MetaDataEdit.FilenameParam method)
(PYME.localization.MetaDataEdit.FloatListParam method)
(PYME.localization.MetaDataEdit.FloatParam method)
(PYME.localization.MetaDataEdit.IntParam method)
(PYME.localization.MetaDataEdit.RangeParam method)
(PYME.localization.MetaDataEdit.StringParam method)
createImage() (in module PYME.Acquire.sampleInformation)
CreateModuleMenu() (PYME.DSView.dsviewer.DSViewFrame method)
CreatePens() (PYME.DSView.modules.flowView.FlowView method)
(PYME.DSView.modules.particleTracking.ParticleTrackingView method)
createQT() (in module PYME.Analysis.points.QuadTree.pointQT)
(in module PYME.Analysis.points.QuadTree.pointQTF)
createQueue() (PYME.ParallelTasks.taskServerZC.TaskQueueSet method)
CreateToolBar() (PYME.DSView.DisplayOptionsPanel.OptionsPanel method)
CreateToolPanel() (PYME.Acquire.acquiremainframe.PYMEMainFrame method)
CropExportData() (in module PYME.IO.dataExporter)
cropper (class in PYME.DSView.modules.cropping)
CSInterpolator (class in PYME.localization.FitFactories.Interpolators.CSInterpolator)
(class in PYME.localization.FitFactories.Interpolators.CubeSInterpolatorP)
CubicSplineInterpolator (class in PYME.localization.FitFactories.Interpolators.CubicSplineInterpolator)
CurrentRenderer (class in PYME.LMVis.renderers)
CziFile (class in PYME.contrib.gohlke.czifile)

D

data (PYME.misc.editgrid.EntryGrid attribute)
DataBlock (class in PYME.DSView.modules.blobMeasure)
dataBuffer (class in PYME.Analysis.buffers)
(class in PYME.IO.DataSources.BGSDataSource)
(class in PYME.ParallelTasks.HDFTaskQueue)
DataChanged() (PYME.DSView.dsviewer.DSViewFrame method)
dataserver (class in PYME.ParallelTasks.dataserver_wsgi)
DataSource (class in PYME.IO.DataSources.AlignDataSource)
(class in PYME.IO.DataSources.BGSDataSource)
(class in PYME.IO.DataSources.BioformatsDataSource)
(class in PYME.IO.DataSources.BufferedDataSource)
(class in PYME.IO.DataSources.ClusterPZFDataSource)
(class in PYME.IO.DataSources.DcimgDataSource)
(class in PYME.IO.DataSources.FlatFieldDataSource)
(class in PYME.IO.DataSources.HDFDataSource)
(class in PYME.IO.DataSources.HTTPDataSource)
(class in PYME.IO.DataSources.ImageSeriesDataSource)
(class in PYME.IO.DataSources.MultiviewDataSource)
(class in PYME.IO.DataSources.TQDataSource)
(class in PYME.IO.DataSources.TiffDataSource)
(class in PYME.IO.DataSources.UnsplitDataSource)
dataSource (PYME.LMVis.filterPane.FilterPanel attribute)
dataSources (PYME.LMVis.pipeline.Pipeline attribute)
dBdt() (in module PYME.Analysis.BleachProfile.deMod)
DCIMGFile (class in PYME.IO.dcimg)
deblock() (PYME.Deconv.tq_block_dec.blocking_deconv method)
debugPrint() (in module PYME.DSView.modules.LMAnalysis)
dec (class in PYME.Analysis.PSFEst.dec)
(class in PYME.Deconv.dec)
(class in PYME.Deconv.deccs)
(class in PYME.Deconv.deccs2)
(class in PYME.Deconv.deccs_mc)
dec_4pi (class in PYME.Deconv.dec)
dec_4pi_c (class in PYME.Deconv.dec)
dec_bead (class in PYME.Deconv.dec)
(class in PYME.Deconv.deccs)
(class in PYME.Deconv.deccs2)
(class in PYME.Deconv.deccs_mc)
dec_conv (class in PYME.Deconv.dec)
(class in PYME.Deconv.deccs)
(class in PYME.Deconv.deccs2)
(class in PYME.Deconv.deccs_mc)
(class in PYME.Deconv.richardsonLucy)
(class in PYME.Deconv.richardsonLucyMV)
(class in PYME.Deconv.richardsonLucyMVM)
dec_conv_slow (class in PYME.Deconv.richardsonLucy)
(class in PYME.Deconv.richardsonLucyMV)
(class in PYME.Deconv.richardsonLucyMVM)
dec_gauss (class in PYME.Deconv.deccs)
(class in PYME.Deconv.deccs2)
(class in PYME.Deconv.deccs_mc)
dec_psf (class in PYME.Analysis.PSFEst.dec)
dec_sparse (class in PYME.Deconv.deccs2)
dec_subsamp (class in PYME.Deconv.deccs2)
dec_test() (in module PYME.Analysis.PSFEst.psfQuality)
dec_wiener (class in PYME.Deconv.wiener)
DecayAnalyser (class in PYME.LMVis.Extras.photophysics)
deClump() (in module PYME.Analysis.points.DeClump.pyDeClump)
deClumpDialog (class in PYME.Analysis.points.DeClump.deClumpGUI)
deClumpedDType() (in module PYME.Analysis.points.DeClump.pyDeClump)
deClumpf() (in module PYME.Analysis.points.DeClump.pyDeClump)
decmod_onestate() (in module PYME.Analysis.BleachProfile.intensProf)
decode() (PYME.contrib.lzw.Decoder method)
decodefrombytes() (PYME.contrib.lzw.ByteDecoder method)
decodepages() (PYME.contrib.lzw.PagingDecoder method)
Decoder (class in PYME.contrib.lzw)
decompress() (in module PYME.contrib.lzw)
decompZar() (in module PYME.misc.zemax)
deconv() (PYME.Analysis.PSFEst.dec.dec method)
(PYME.Deconv.dec.dec method)
(PYME.Deconv.deccs.dec method)
(PYME.Deconv.deccs2.dec method)
(PYME.Deconv.deccs_mc.dec method)
(PYME.Deconv.richardsonLucy.rldec method)
(PYME.Deconv.richardsonLucyMV.rldec method)
(PYME.Deconv.richardsonLucyMVM.rldec method)
(PYME.Deconv.wiener.dec_wiener method)
Deconvolve (class in PYME.recipes.processing)
DeconvolveMotionCompensating (class in PYME.recipes.processing)
deconvolver (class in PYME.DSView.modules.deconvolution)
deconvp() (PYME.Deconv.dec.dec method)
(PYME.Deconv.richardsonLucy.rldec method)
(PYME.Deconv.richardsonLucyMV.rldec method)
(PYME.Deconv.richardsonLucyMVM.rldec method)
DeconvProgressDialog (class in PYME.Deconv.deconvDialogs)
DeconvProgressPanel (class in PYME.Deconv.deconvDialogs)
DeconvSettingsDialog (class in PYME.Deconv.deconvDialogs)
decResult (class in PYME.Deconv.decTask)
decTask (class in PYME.Deconv.decTask)
decThread (class in PYME.Deconv.decThread)
DEFAULT_PARAMS (PYME.Acquire.ui.AnalysisSettingsUI.AnalysisDetailsPanel attribute)
(PYME.DSView.modules.LMAnalysis.AnalysisSettingsView attribute)
default_traits_view() (PYME.DSView.modules.particleTracking.ParticleTrackingView method)
(PYME.recipes.base.ModuleBase method)
(PYME.recipes.processing.Deconvolve method)
default_view (PYME.DSView.modules.particleTracking.ParticleTrackingView attribute)
(PYME.recipes.base.ModuleBase attribute)
(PYME.recipes.tablefilters.FilterTable attribute)
DefaultGlass (class in PYME.misc.zemax)
DefaultList (class in PYME.IO.DataSources.BaseDataSource)
deleteFiles() (in module PYME.misc.diskCleanup)
DeleteItem() (PYME.DSView.modules.composite.ImageList method)
dependancyGraph() (PYME.recipes.base.ModuleCollection method)
depth_dec() (in module PYME.Analysis.PSFEst.psfQuality)
depth_loc() (in module PYME.Analysis.PSFEst.psfQuality)
descr (PYME.IO.dataExporter.H5Exporter attribute)
(PYME.IO.dataExporter.NumpyExporter attribute)
(PYME.IO.dataExporter.OMETiffExporter attribute)
(PYME.IO.dataExporter.PSFExporter attribute)
(PYME.IO.dataExporter.TiffSeriesExporter attribute)
(PYME.IO.dataExporter.TiffStackExporter attribute)
(PYME.IO.dataExporter.TxtExporter attribute)
DespeckleFilter (class in PYME.recipes.filters)
destroy() (PYME.Acquire.frameWrangler.FrameWrangler method)
(PYME.Acquire.zScanner.zScanner method)
detach() (PYME.Acquire.Utils.fastTiler.fastTiler method)
Detach() (PYME.Acquire.Utils.vibrationAnalysis.VibrAnal method)
Detatch() (PYME.Acquire.positionTracker.PositionTracker method)
dictToRecarray() (in module PYME.Analysis.processLogger)
DirectionToMask3D (class in PYME.recipes.processing)
dirichlet() (in module PYME.Analysis.multicolourMeta)
(in module PYME.Analysis.points.DeClump.deClumpGUI)
(in module PYME.Analysis.points.EdgeDB.edgeTest)
(in module PYME.Analysis.points.QuadTree)
(in module PYME.Analysis.points.QuadTree.QTrend)
(in module PYME.Analysis.points.QuadTree.rendQT)
(in module PYME.Analysis.points.twoColourPlot)
(in module PYME.Deconv.deccs_mc)
(in module PYME.localization.FitFactories.SplitterObjFindR)
(in module PYME.localization.FitFactories.SplitterShiftEstFR)
(in module PYME.localization.Test.fitTestJig)
(in module PYME.localization.Test.fitTestJigWC)
(in module PYME.localization.twist)
(in module PYME.misc.aniso)
(in module PYME.misc.facsPlot)
(in module PYME.misc.kdFit)
dirname() (in module PYME.IO.unifiedIO)
disk_usage() (in module PYME.IO.FileUtils.freeSpace)
dispersion_data() (in module PYME.misc.read_agf)
DisplayOpts (class in PYME.DSView.displayOptions)
DisplayPane (class in PYME.LMVis.displayPane)
DisplayPaneLight (class in PYME.LMVis.displayPane)
dispRatio() (in module PYME.Analysis.points.twoColour)
dispSettingsFrame (class in PYME.DSView.displaySettingsPanel)
dispSettingsPanel (class in PYME.DSView.displaySettingsPanel)
dispSettingsPanel2 (class in PYME.DSView.displaySettingsPanel)
distance (PYME.Analysis.Tracking.trackUtils.Track attribute)
DistanceTransform (class in PYME.recipes.processing)
Distributor (class in PYME.ParallelTasks.distributor)
Divide (class in PYME.recipes.base)
dlHd() (PYME.Deconv.richardsonLucyMVM.rldec method)
dlHd2() (PYME.Deconv.richardsonLucyMVM.rldec method)
dNdfcn() (in module PYME.Analysis.BleachProfile.intensProf)
dNofcn() (in module PYME.Analysis.BleachProfile.intensProf)
do_GET() (PYME.ParallelTasks.dataserver_wsgi.dataserver method)
(PYME.ParallelTasks.HTTPDataServer.PYMEHTTPRequestHandler method)
(PYME.ParallelTasks.httpSpoolTarget.GetHandler method)
(PYME.ParallelTasks.webframework.JSONAPIRequestHandler method)
do_HEAD() (PYME.ParallelTasks.dataserver_wsgi.dataserver method)
do_POST() (PYME.ParallelTasks.httpSpoolTarget.GetHandler method)
(PYME.ParallelTasks.webframework.JSONAPIRequestHandler method)
do_proj() (PYME.recipes.processing.ProjectOnVector method)
do_PUT() (PYME.ParallelTasks.dataserver_wsgi.dataserver method)
(PYME.ParallelTasks.HTTPDataServer.PYMEHTTPRequestHandler method)
DoGFilter (class in PYME.recipes.filters)
doInvTCHist() (in module PYME.LMVis.tcHist)
doNix() (in module PYME.ParallelTasks.taskQueue)
DoNix() (PYME.DSView.arrayViewPanel.ArrayViewPanel method)
(PYME.DSView.scrolledImagePanel.ImagePanel method)
doNothing() (in module PYME.misc.mock_ctypes)
DoPaint() (PYME.Acquire.ui.splashScreen.SplashPanel method)
(PYME.DSView.arrayViewPanel.ArrayViewPanel method)
(PYME.DSView.eventLogViewer.eventLogPanel method)
(PYME.DSView.eventLogViewer.eventLogTPanel method)
(PYME.DSView.splashScreen.SplashPanel method)
(PYME.LMVis.imageView.ColourImageViewPanel method)
(PYME.LMVis.imageView.ImageViewPanel method)
(PYME.ui.fastGraph.FastGraphPanel method)
(PYME.ui.histLimits.HistLimitPanel method)
doPostInit() (PYME.Acquire.acquiremainframe.PYMEMainFrame method)
doStartLog() (PYME.Acquire.Spooler.Spooler method)
(PYME.Acquire.stackSettings.StackSettings method)
doStopLog() (PYME.Acquire.Spooler.Spooler method)
(PYME.Acquire.stackSettings.StackSettings method)
doTCHist() (in module PYME.LMVis.tcHist)
doTraceDisp() (in module PYME.Analysis.BleachProfile.intensProf)
doTraceDispdl() (in module PYME.Analysis.BleachProfile.intensProf)
doTraceDispdl2() (in module PYME.Analysis.BleachProfile.intensProf)
draw() (PYME.Acquire.positionTracker.TrackerPanel method)
(PYME.Acquire.positionTracker.TrackerPlotPanel method)
(PYME.DSView.fitInfo.fitDispPanel method)
(PYME.DSView.modules.fastGraphPanel.GraphViewPanel method)
(PYME.DSView.modules.graphViewPanel.GraphViewPanel method)
(PYME.DSView.modules.pupilView.GraphViewPanel method)
(PYME.LMVis.colourPanel.colourPlotPanel method)
(PYME.LMVis.progGraph.progPanel method)
(PYME.contrib.wxPlotPanel.PlotPanel method)
(PYME.recipes.recipeGui.RecipePlotPanel method)
draw_rubberband() (PYME.DSView.modules.graphViewPanel.MyNavigationToolbar method)
(PYME.DSView.modules.pupilView.MyNavigationToolbar method)
drawChannelGraphs() (in module PYME.Analysis.multicolourMeta)
DrawContours() (PYME.DSView.arrayViewPanel.ArrayViewPanel method)
DrawCrosshairs() (PYME.DSView.arrayViewPanel.ArrayViewPanel method)
DrawEllipses() (PYME.ui.autoFoldPanel.CaptionBar method)
drawGraph() (in module PYME.misc.depGraph)
drawGraphs() (in module PYME.Analysis.multicolourMeta)
DrawLine() (PYME.DSView.modules.svmLabel.manualLabel method)
drawNode() (PYME.Analysis.points.QuadTree.QTrend.QTRendererNode method)
drawNodeDL() (PYME.Analysis.points.QuadTree.QTrend.QTRendererNode method)
drawOverlay() (PYME.DSView.modules.blobMeasure.BlobObject method)
DrawOverlays() (PYME.DSView.fitInfo.FitInfoPanel method)
(PYME.DSView.modules.blobMeasure.Measurements method)
(PYME.DSView.modules.flowView.FlowView method)
(PYME.DSView.modules.manualSegment.manualSegment method)
(PYME.DSView.modules.particleTracking.ParticleTrackingView method)
(PYME.DSView.modules.psfExtraction.psfExtractor method)
(PYME.DSView.modules.svmLabel.manualLabel method)
(PYME.LMVis.imageView.ImageViewPanel method)
DrawOverlays_() (PYME.DSView.modules.flowView.FlowView method)
drawPairwiseGraphs() (in module PYME.Analysis.multicolourMeta)
DrawPoints() (PYME.DSView.arrayViewPanel.ArrayViewPanel method)
drawProgBar() (PYME.Acquire.ui.splashScreen.SplashPanel method)
(PYME.DSView.splashScreen.SplashPanel method)
DrawScaleBar() (PYME.DSView.arrayViewPanel.ArrayViewPanel method)
DrawSelection() (PYME.DSView.arrayViewPanel.ArrayViewPanel method)
DrawTracks() (PYME.DSView.arrayViewPanel.ArrayViewPanel method)
drawTree() (PYME.Analysis.points.QuadTree.pointQT.qtBranchNode method)
(PYME.Analysis.points.QuadTree.pointQT.qtLeafNode method)
(PYME.Analysis.points.QuadTree.pointQTF.qtBranchNode method)
(PYME.Analysis.points.QuadTree.pointQTF.qtLeafNode method)
dsa (PYME.Acquire.frameWrangler.FrameWrangler attribute)
dsRefresh() (PYME.DSView.dsviewer.DSViewFrame method)
DSTaskQueue (class in PYME.ParallelTasks.DSTaskQueue)
dsviewer_plugin_callback() (PYME.recipes.base.Filter class method)
DSViewFrame (class in PYME.DSView.dsviewer)
dt (class in PYME.DSView.dsviewer)
(class in PYME.recipes.recipeGui)
dtype (PYME.contrib.gohlke.czifile.CziFile attribute)
dtypes (PYME.Analysis.Tracking.trackUtils.Clump attribute)
(PYME.LMVis.pipeline.Pipeline attribute)
DumbellFitFactory (class in PYME.localization.FitFactories.DumbellFitR)
dummy (class in PYME.LMVis.visHelpers)
(class in PYME.localization.FitFactories.Interpolators.baseInterpolator)
dumps() (in module PYME.IO.PZFFormat)
duplicateFiles() (in module PYME.IO.clusterDuplication)
DupManager (class in PYME.IO.clusterDuplication)
dyedyemod() (in module PYME.Analysis.BleachProfile.rawIntensity)
dyedyemod2() (in module PYME.Analysis.BleachProfile.rawIntensity)
dyedyemod3() (in module PYME.Analysis.BleachProfile.rawIntensity)
dyedyemoda() (in module PYME.Analysis.BleachProfile.rawIntensity)
dyedyemodt() (in module PYME.Analysis.BleachProfile.rawIntensity)
dynamic_update() (PYME.DSView.modules.graphViewPanel.MyNavigationToolbar method)
(PYME.DSView.modules.pupilView.MyNavigationToolbar method)

E

e2mod() (in module PYME.Analysis.BleachProfile.kinModels)
e3mod() (in module PYME.Analysis.BleachProfile.kinModels)
e4mod() (in module PYME.Analysis.BleachProfile.kinModels)
EdgeDB (class in PYME.Analysis.points.EdgeDB.edges)
EditableTreeList (class in PYME.ui.MetadataTree)
EditGrid (class in PYME.misc.editgrid)
EditListCtrl (class in PYME.ui.editList)
editorBgColour (PYME.contrib.listctrlMixins.TextEditMixin attribute)
(PYME.ui.MetadataTree.TextEditMixin attribute)
editorFgColour (PYME.contrib.listctrlMixins.TextEditMixin attribute)
(PYME.ui.MetadataTree.TextEditMixin attribute)
efunc() (in module PYME.misc.kdFit)
ei2mod() (in module PYME.Analysis.BleachProfile.kinModels)
ei3mod() (in module PYME.Analysis.BleachProfile.kinModels)
eimod() (in module PYME.Analysis.BleachProfile.kinModels)
elect() (PYME.IO.clusterDuplication.DupManager method)
emg() (in module PYME.localization.Test.fitTestJig)
(in module PYME.localization.Test.fitTestJigSCMOS)
(in module PYME.localization.Test.fitTestJigWC)
eMod() (in module PYME.Analysis.BleachProfile.intensProf)
emod() (in module PYME.Analysis.BleachProfile.kinModels)
eMod2() (in module PYME.Analysis.BleachProfile.intensProf)
eMod3() (in module PYME.Analysis.BleachProfile.intensProf)
eMod4() (in module PYME.Analysis.BleachProfile.intensProf)
eMod5() (in module PYME.Analysis.BleachProfile.intensProf)
emptyListDict (class in PYME.LMVis.gen3DTriangs)
EnableJoystick() (PYME.Acquire.microscope.microscope method)
encode() (PYME.contrib.lzw.Encoder method)
encodepages() (PYME.contrib.lzw.PagingEncoder method)
Encoder (class in PYME.contrib.lzw)
encodetobytes() (PYME.contrib.lzw.ByteEncoder method)
EndSelection() (PYME.DSView.arrayViewPanel.ArrayViewPanel method)
(PYME.DSView.displayOptions.DisplayOpts method)
(PYME.LMVis.imageView.ImageViewPanel method)
ensure_VM() (in module PYME.IO.DataSources.BioformatsDataSource)
EntryGrid (class in PYME.misc.editgrid)
EnumEditor() (in module PYME.misc.mock_traitsui)
errFunc() (PYME.misc.coverslipGeometries.circGeom method)
error() (PYME.localization.Test.fitTestJig.fitTestJig method)
(PYME.localization.Test.fitTestJigSCMOS.fitTestJig method)
(PYME.localization.Test.fitTestJigWC.fitTestJig method)
errorPlot() (in module PYME.Analysis.binAvg)
estimateFromSource() (PYME.IO.image.ImageBounds class method)
(PYME.LMVis.visHelpersMin.ImageBounds class method)
eth_mod2() (in module PYME.Analysis.BleachProfile.intensProf)
eth_mod3() (in module PYME.Analysis.BleachProfile.intensProf)
ethet3() (in module PYME.Analysis.BleachProfile.intensProf)
ev() (PYME.Analysis.points.twoColour.lin2Model method)
(PYME.Analysis.points.twoColour.lin3Model method)
(PYME.Analysis.points.twoColour.lin3zModel method)
(PYME.Analysis.points.twoColour.linModel method)
(PYME.Analysis.points.twoColour.sffake method)
(PYME.misc.sffake.sffake method)
evalModel() (PYME.localization.FitFactories.AstigGaussFitFR.GaussianFitFactory class method)
(PYME.localization.FitFactories.AstigGaussGPUFitFR.GaussianFitFactory class method)
(PYME.localization.FitFactories.DumbellFitR.DumbellFitFactory class method)
(PYME.localization.FitFactories.GaussFitConstrR.GaussianFitFactory class method)
(PYME.localization.FitFactories.GaussMultifitLinesR.GaussianFitFactory class method)
(PYME.localization.FitFactories.GaussMultifitR.GaussianFitFactory class method)
(PYME.localization.FitFactories.GaussMultifitSR.GaussianFitFactory class method)
(PYME.localization.FitFactories.InterpFitR.PSFFitFactory class method)
(PYME.localization.FitFactories.LatGaussFitFR.GaussianFitFactory class method)
(PYME.localization.FitFactories.PRInterpFitQR.PSFFitFactory class method)
(PYME.localization.FitFactories.PRInterpFitR.PSFFitFactory class method)
(PYME.localization.FitFactories.SpecGaussFitFR.GaussianFitFactory class method)
(PYME.localization.FitFactories.SplitterFitFNR.GaussianFitFactory class method)
(PYME.localization.FitFactories.SplitterFitFusionR.GaussianFitFactory class method)
(PYME.localization.FitFactories.SplitterFitInterpBNR.InterpFitFactory class method)
(PYME.localization.FitFactories.SplitterFitInterpNR.InterpFitFactory class method)
(PYME.localization.FitFactories.SplitterMultifitSR.GaussianFitFactory class method)
evalParams() (PYME.localization.Test.fitTestJigSCMOS.fitTestJig method)
eventFileName (PYME.IO.DataSources.ClusterPZFDataSource.DataSource attribute)
eventInfo (class in PYME.misc.eventSpy)
EventLogger (class in PYME.Acquire.HDFSpooler)
(class in PYME.Acquire.HTTPHDFSpooler)
(class in PYME.Acquire.HTTPSpooler)
(class in PYME.Acquire.QueueSpooler)
(class in PYME.Acquire.Spooler)
eventLogPanel (class in PYME.DSView.eventLogViewer)
eventLogTPanel (class in PYME.DSView.eventLogViewer)
events (PYME.IO.h5rFile.H5RFile attribute)
Ex() (in module PYME.Acquire.protocol)
excepthook() (in module PYME.misc.pyro_tracebacks)
execBG() (in module PYME.Acquire.ExecTools)
execFile() (in module PYME.Acquire.ExecTools)
execFileBG() (in module PYME.Acquire.ExecTools)
execute() (PYME.recipes.base.ArithmaticFilter method)
(PYME.recipes.base.ExtractChannel method)
(PYME.recipes.base.Filter method)
(PYME.recipes.base.JoinChannels method)
(PYME.recipes.base.ModuleBase method)
(PYME.recipes.base.ModuleCollection method)
(PYME.recipes.base.OutputModule method)
(PYME.recipes.measurement.AddMetadataToMeasurements method)
(PYME.recipes.measurement.BinnedHistogram method)
(PYME.recipes.measurement.FitDumbells method)
(PYME.recipes.measurement.FitPoints method)
(PYME.recipes.measurement.Histogram method)
(PYME.recipes.measurement.ImageCumulativeHistogram method)
(PYME.recipes.measurement.ImageHistogram method)
(PYME.recipes.measurement.IntensityAtPoints method)
(PYME.recipes.measurement.MeanNeighbourDistances method)
(PYME.recipes.measurement.Measure2D method)
(PYME.recipes.measurement.MultifitBlobs method)
(PYME.recipes.measurement.NearestNeighbourDistances method)
(PYME.recipes.measurement.PairwiseDistanceHistogram method)
(PYME.recipes.measurement.Plot method)
(PYME.recipes.processing.DirectionToMask3D method)
(PYME.recipes.processing.Gradient2D method)
(PYME.recipes.processing.Gradient3D method)
(PYME.recipes.processing.OpticalFlow method)
(PYME.recipes.processing.ProjectOnVector method)
(PYME.recipes.processing.VectorfieldCurl method)
(PYME.recipes.processing.VectorfieldNorm method)
(PYME.recipes.processing.Watershed method)
(PYME.recipes.tablefilters.AggregateMeasurements method)
(PYME.recipes.tablefilters.ConcatenateTables method)
(PYME.recipes.tablefilters.FilterTable method)
(PYME.recipes.tablefilters.Mapping method)
(PYME.recipes.tablefilters.SelectTableColumns method)
(PYME.recipes.tracking.ExtractTracks method)
(PYME.recipes.tracking.FitFusionTraces method)
(PYME.recipes.tracking.LoadSpeckles method)
(PYME.recipes.tracking.TrackFeatures method)
exists() (in module PYME.Acquire.HTTPSpooler)
(in module PYME.IO.clusterIO)
exponential() (in module PYME.Analysis.multicolourMeta)
(in module PYME.Analysis.points.DeClump.deClumpGUI)
(in module PYME.Analysis.points.EdgeDB.edgeTest)
(in module PYME.Analysis.points.QuadTree)
(in module PYME.Analysis.points.QuadTree.QTrend)
(in module PYME.Analysis.points.QuadTree.rendQT)
(in module PYME.Analysis.points.twoColourPlot)
(in module PYME.Deconv.deccs_mc)
(in module PYME.localization.FitFactories.SplitterObjFindR)
(in module PYME.localization.FitFactories.SplitterShiftEstFR)
(in module PYME.localization.Test.fitTestJig)
(in module PYME.localization.Test.fitTestJigWC)
(in module PYME.localization.twist)
(in module PYME.misc.aniso)
(in module PYME.misc.facsPlot)
(in module PYME.misc.kdFit)
Export() (PYME.IO.dataExporter.Exporter method)
(PYME.IO.dataExporter.H5Exporter method)
(PYME.IO.dataExporter.NumpyExporter method)
(PYME.IO.dataExporter.OMETiffExporter method)
(PYME.IO.dataExporter.PSFExporter method)
(PYME.IO.dataExporter.TiffSeriesExporter method)
(PYME.IO.dataExporter.TiffStackExporter method)
(PYME.IO.dataExporter.TxtExporter method)
ExportData() (in module PYME.IO.dataExporter)
ExportDialog (class in PYME.IO.dataExporter)
Exporter (class in PYME.IO.dataExporter)
exporter() (in module PYME.IO.dataExporter)
ExportImageToCluster() (in module PYME.IO.clusterExport)
ExtendContext() (PYME.Analysis.processLogger.ContextManager method)
extension (PYME.IO.dataExporter.H5Exporter attribute)
(PYME.IO.dataExporter.NumpyExporter attribute)
(PYME.IO.dataExporter.OMETiffExporter attribute)
(PYME.IO.dataExporter.PSFExporter attribute)
(PYME.IO.dataExporter.TiffSeriesExporter attribute)
(PYME.IO.dataExporter.TiffStackExporter attribute)
(PYME.IO.dataExporter.TxtExporter attribute)
extensions_map (PYME.ParallelTasks.dataserver_wsgi.dataserver attribute)
extractBlobs() (in module PYME.DSView.modules.extractBlobs)
ExtractChannel (class in PYME.recipes.base)
extractFeatures() (in module PYME.Analysis.svmSegment)
extractFeatures2() (in module PYME.Analysis.svmSegment)
extractFrames() (in module PYME.IO.FileUtils.h5ExFrames)
extractFramesF() (in module PYME.IO.FileUtils.h5ExFrames)
extractFromMetadata() (PYME.IO.image.ImageBounds class method)
extractIms() (in module PYME.Analysis.PSFEst.extractImages)
ExtractPupil() (in module PYME.Analysis.PSFGen.fourierHNA)
ExtractTracks (class in PYME.recipes.tracking)

F

f() (in module PYME.Analysis.multicolourMeta)
(in module PYME.Analysis.points.DeClump.deClumpGUI)
(in module PYME.Analysis.points.EdgeDB.edgeTest)
(in module PYME.Analysis.points.QuadTree)
(in module PYME.Analysis.points.QuadTree.QTrend)
(in module PYME.Analysis.points.QuadTree.rendQT)
(in module PYME.Analysis.points.twoColourPlot)
(in module PYME.Deconv.deccs_mc)
(in module PYME.localization.FitFactories.SplitterObjFindR)
(in module PYME.localization.FitFactories.SplitterShiftEstFR)
(in module PYME.localization.Test.fitTestJig)
(in module PYME.localization.Test.fitTestJigWC)
(in module PYME.localization.twist)
(in module PYME.misc.aniso)
(in module PYME.misc.facsPlot)
(in module PYME.misc.kdFit)
f2() (in module PYME.DSView.htmlServe)
f_dumbell() (in module PYME.localization.FitFactories.DumbellFitR)
f_gauss1d() (in module PYME.localization.FitFactories.SpecGaussFitFR)
f_gauss2d() (in module PYME.localization.FitFactories.GaussFitConstrR)
(in module PYME.localization.FitFactories.GaussMultifitR)
(in module PYME.localization.FitFactories.LatGaussFitFR)
(in module PYME.localization.FitFactories.SplitterFitFusionR)
(in module PYME.localization.FitFactories.SplitterMultifitSR)
f_gauss2d2c() (in module PYME.localization.FitFactories.SplitterFitFNR)
(in module PYME.localization.FitFactories.SplitterFitFusionR)
(in module PYME.localization.FitFactories.SplitterObjFindR)
(in module PYME.localization.FitFactories.SplitterShiftEstFR)
f_gauss2d2cA() (in module PYME.localization.FitFactories.SplitterFitFNR)
(in module PYME.localization.FitFactories.SplitterFitFusionR)
f_gauss2d2ccb() (in module PYME.localization.FitFactories.SplitterFitFNR)
(in module PYME.localization.FitFactories.SplitterFitFusionR)
f_gauss2d_no_bg() (in module PYME.localization.FitFactories.LatGaussFitFR)
f_gauss2dF() (in module PYME.localization.FitFactories.GaussFitConstrR)
(in module PYME.localization.FitFactories.GaussMultifitR)
(in module PYME.localization.FitFactories.LatGaussFitFR)
(in module PYME.localization.FitFactories.SplitterMultifitSR)
f_gauss2dSlow() (in module PYME.localization.FitFactories.GaussFitConstrR)
(in module PYME.localization.FitFactories.GaussMultifitR)
(in module PYME.localization.FitFactories.LatGaussFitFR)
(in module PYME.localization.FitFactories.SplitterMultifitSR)
f_Gauss3d() (in module PYME.localization.FitFactories.Gauss3DFitR)
f_gaussAstigSlow() (in module PYME.localization.FitFactories.AstigGaussFitFR)
(in module PYME.localization.FitFactories.AstigGaussGPUFitFR)
f_Interp3d() (in module PYME.localization.FitFactories.InterpFitR)
(in module PYME.localization.FitFactories.PRInterpFitQR)
(in module PYME.localization.FitFactories.PRInterpFitR)
f_Interp3d2c() (in module PYME.localization.FitFactories.SplitterFitInterpNR)
f_Interp3d2cr() (in module PYME.localization.FitFactories.SplitterFitInterpBNR)
f_J_gauss2d() (in module PYME.localization.FitFactories.GaussFitConstrR)
f_j_gauss2d() (in module PYME.localization.FitFactories.GaussFitConstrR)
f_J_gauss2d() (in module PYME.localization.FitFactories.GaussMultifitR)
f_j_gauss2d() (in module PYME.localization.FitFactories.GaussMultifitR)
f_J_gauss2d() (in module PYME.localization.FitFactories.LatGaussFitFR)
f_j_gauss2d() (in module PYME.localization.FitFactories.LatGaussFitFR)
f_J_gauss2d() (in module PYME.localization.FitFactories.SplitterMultifitSR)
f_j_gauss2d() (in module PYME.localization.FitFactories.SplitterMultifitSR)
f_J_Interp3d2c() (in module PYME.localization.FitFactories.SplitterFitInterpBNR)
(in module PYME.localization.FitFactories.SplitterFitInterpNR)
f_multiGauss() (in module PYME.localization.FitFactories.GaussMultifitLinesR)
(in module PYME.localization.FitFactories.GaussMultifitR)
(in module PYME.localization.FitFactories.GaussMultifitSR)
(in module PYME.localization.FitFactories.SplitterMultifitSR)
f_multiGaussJ() (in module PYME.localization.FitFactories.GaussMultifitLinesR)
(in module PYME.localization.FitFactories.GaussMultifitR)
(in module PYME.localization.FitFactories.GaussMultifitSR)
(in module PYME.localization.FitFactories.SplitterMultifitSR)
f_multiGaussS() (in module PYME.localization.FitFactories.GaussMultifitLinesR)
(in module PYME.localization.FitFactories.GaussMultifitR)
(in module PYME.localization.FitFactories.GaussMultifitSR)
(in module PYME.localization.FitFactories.SplitterMultifitSR)
f_PSF3d() (in module PYME.localization.FitFactories.LatPSFFitR)
facsPlotContour() (in module PYME.misc.facsPlot)
facsPlotScatter() (in module PYME.misc.facsPlot)
facsPlotScatter2() (in module PYME.misc.facsPlot)
facsPlotScatterLog() (in module PYME.misc.facsPlot)
fake_push_deconv() (PYME.Deconv.tq_block_dec.blocking_deconv method)
fakeTime() (PYME.Acquire.Spooler.Spooler method)
fast_grey() (in module PYME.DSView.displayOptions)
FastGraphPanel (class in PYME.ui.fastGraph)
fastRectTiler (class in PYME.Acquire.Utils.fastTiler)
fastTiler (class in PYME.Acquire.Utils.fastTiler)
FeatureMean (class in PYME.Analysis.Tracking.trackUtils)
FeaturePlot (class in PYME.Analysis.Tracking.trackUtils)
FeatureStd (class in PYME.Analysis.Tracking.trackUtils)
FFBase (class in PYME.localization.FitFactories.FFBase)
fftwWeiner (class in PYME.localization.ofind_xcorr_fw)
FIkz() (in module PYME.Analysis.cramerRao)
filebytes() (in module PYME.contrib.lzw)
fileFitResult() (PYME.IO.h5rFile.H5RFile method)
fileFormattedResults() (in module PYME.IO.clusterResults)
filename() (PYME.contrib.gohlke.fcsfiles.ConfoCor3Raw method)
FilenameParam (class in PYME.localization.MetaDataEdit)
fileResult() (PYME.ParallelTasks.HDFTaskQueue.HDFResultsTaskQueue method)
(PYME.ParallelTasks.taskQueue.TaskQueue method)
fileResults() (in module PYME.IO.clusterResults)
(PYME.ParallelTasks.HDFTaskQueue.HDFResultsTaskQueue method)
(PYME.ParallelTasks.taskQueue.TaskQueue method)
FileSource (class in PYME.LMVis.Extras.pointSetGeneration)
fileTasksForFrames() (PYME.ParallelTasks.HTTPTaskPusher.HTTPTaskPusher method)
fileTasksForInputs() (PYME.ParallelTasks.HTTPTaskPusher.HTTPRecipePusher method)
fillInBlanks() (in module PYME.Analysis.MetaData)
FillSelection() (PYME.DSView.modules.manualSegment.manualSegment method)
(PYME.DSView.modules.svmLabel.manualLabel method)
Filter (class in PYME.recipes.base)
filter() (PYME.localization.ofind_xcorr_fw.fftwWeiner method)
(PYME.recipes.base.ArithmaticFilter method)
(PYME.recipes.base.Filter method)
(PYME.recipes.processing.Watershed method)
filtered (PYME.Analysis.Tracking.trackUtils.TrackManager attribute)
filtered_subblock_directory (PYME.contrib.gohlke.czifile.CziFile attribute)
FilterEditDialog (class in PYME.LMVis.editFilterDialog)
filterer (class in PYME.DSView.modules.filtering)
(class in PYME.DSView.modules.sparkprepare)
FilterPane (class in PYME.DSView.modules.measure.filterPan)
(class in PYME.LMVis.filterPane)
FilterPanel (class in PYME.LMVis.filterPane)
FilterTable (class in PYME.recipes.tablefilters)
fImod() (in module PYME.Analysis.BleachProfile.kinModels)
find_catalog() (in module PYME.misc.read_agf)
find_glassdict() (in module PYME.misc.read_agf)
findAnalysis() (in module PYME.dataBrowser.dirView)
FindAndFit() (PYME.localization.FitFactories.AstigGaussGPUFitFR.GaussianFitFactory method)
(PYME.localization.FitFactories.GaussMultifitLinesR.GaussianFitFactory method)
(PYME.localization.FitFactories.GaussMultifitR.GaussianFitFactory method)
(PYME.localization.FitFactories.GaussMultifitSR.GaussianFitFactory method)
(PYME.localization.FitFactories.SplitterMultifitSR.GaussianFitFactory method)
findClumps() (in module PYME.Analysis.points.DeClump.pyDeClump)
(in module PYME.Analysis.points.multiview)
findConnected() (in module PYME.Analysis.points.DeClump.pyDeClump)
FINDING_PARAMS (PYME.DSView.modules.LMAnalysis.AnalysisSettingsView attribute)
FindObjects() (PYME.localization.ofind.ObjectIdentifier method)
(PYME.localization.ofind3d.ObjectIdentifier method)
(PYME.localization.ofind_nofilt.ObjectIdentifier method)
(PYME.localization.ofind_pri.ObjectIdentifier method)
(PYME.localization.ofind_split.ObjectIdentifier method)
(PYME.localization.ofind_xcorr.ObjectIdentifier method)
(PYME.localization.ofind_xcorr_fw.ObjectIdentifier method)
findRectangularROIs() (in module PYME.Analysis.deTile)
findTracks() (in module PYME.Analysis.Tracking.trackUtils)
findWonkyVectors() (in module PYME.Analysis.points.twoColour)
fit() (PYME.Analysis.points.twoColour.lin2Model method)
(PYME.Analysis.points.twoColour.lin3Model method)
(PYME.Analysis.points.twoColour.lin3zModel method)
(PYME.Analysis.points.twoColour.linModel method)
(PYME.Analysis.points.twoColour.sffake method)
Fit() (PYME.misc.coverslipGeometries.geom method)
fitDecay() (in module PYME.Analysis.BleachProfile.kinModels)
FitDefaults (class in PYME.DSView.modules.LMAnalysis)
fitDispPanel (class in PYME.DSView.fitInfo)
FitDumbells (class in PYME.recipes.measurement)
FitFactory (in module PYME.localization.FitFactories.AstigGaussFitFR)
(in module PYME.localization.FitFactories.AstigGaussGPUFitFR)
(in module PYME.localization.FitFactories.DumbellFitR)
(in module PYME.localization.FitFactories.FFBase)
(in module PYME.localization.FitFactories.Gauss3DFitR)
(in module PYME.localization.FitFactories.GaussFitConstrR)
(in module PYME.localization.FitFactories.GaussMultifitLinesR)
(in module PYME.localization.FitFactories.GaussMultifitR)
(in module PYME.localization.FitFactories.GaussMultifitSR)
(in module PYME.localization.FitFactories.InterpFitR)
(in module PYME.localization.FitFactories.InterpFitWFR)
(in module PYME.localization.FitFactories.LatFitCOIR)
(in module PYME.localization.FitFactories.LatGaussFitFR)
(in module PYME.localization.FitFactories.LatObjFindFR)
(in module PYME.localization.FitFactories.LatPSFFitR)
(in module PYME.localization.FitFactories.PRInterpFitQR)
(in module PYME.localization.FitFactories.PRInterpFitR)
(in module PYME.localization.FitFactories.SpecGaussFitFR)
(in module PYME.localization.FitFactories.SplitterFitCOIR)
(in module PYME.localization.FitFactories.SplitterFitFNR)
(in module PYME.localization.FitFactories.SplitterFitFusionR)
(in module PYME.localization.FitFactories.SplitterFitInterpBNR)
(in module PYME.localization.FitFactories.SplitterFitInterpNR)
(in module PYME.localization.FitFactories.SplitterMultifitSR)
(in module PYME.localization.FitFactories.SplitterObjFindR)
(in module PYME.localization.FitFactories.SplitterROIExtractNR)
(in module PYME.localization.FitFactories.SplitterShiftEstFR)
FitFactory() (in module PYME.localization.FitFactories.ConfocCOIR)
fitFluorBrightness() (in module PYME.Analysis.BleachProfile.kinModels)
fitFluorBrightnessT() (in module PYME.Analysis.BleachProfile.kinModels)
FitFusionTraces (class in PYME.recipes.tracking)
fitIndep() (in module PYME.Analysis.points.twoColour)
FitInfoPanel (class in PYME.DSView.fitInfo)
FitJumpSizeDist() (in module PYME.Analysis.Tracking.trackUtils)
fitKD() (in module PYME.misc.kdFit)
fitMod (PYME.localization.remFitBuf.fitTask attribute)
fITmod() (in module PYME.Analysis.BleachProfile.kinModels)
fITmod2() (in module PYME.Analysis.BleachProfile.kinModels)
FitModelG() (in module PYME.Analysis.BleachProfile.kinModels)
fitOnTimes() (in module PYME.Analysis.BleachProfile.kinModels)
FitPoints (class in PYME.recipes.measurement)
fitResult (class in PYME.localization.remFitBuf)
FitResult() (in module PYME.localization.FitFactories.AstigGaussFitFR)
(in module PYME.localization.FitFactories.AstigGaussGPUFitFR)
(in module PYME.localization.FitFactories.ConfocCOIR)
(in module PYME.localization.FitFactories.DumbellFitR)
(in module PYME.localization.FitFactories.Gauss3DFitR)
(in module PYME.localization.FitFactories.GaussFitConstrR)
(in module PYME.localization.FitFactories.GaussMultifitLinesR)
(in module PYME.localization.FitFactories.GaussMultifitR)
(in module PYME.localization.FitFactories.GaussMultifitSR)
(in module PYME.localization.FitFactories.InterpFitR)
(in module PYME.localization.FitFactories.LatFitCOIR)
(in module PYME.localization.FitFactories.LatGaussFitFR)
(in module PYME.localization.FitFactories.LatObjFindFR)
(in module PYME.localization.FitFactories.LatPSFFitR)
(in module PYME.localization.FitFactories.PRInterpFitQR)
(in module PYME.localization.FitFactories.PRInterpFitR)
(in module PYME.localization.FitFactories.SpecGaussFitFR)
(in module PYME.localization.FitFactories.SplitterFitCOIR)
(in module PYME.localization.FitFactories.SplitterFitFNR)
(in module PYME.localization.FitFactories.SplitterFitFusionR)
(in module PYME.localization.FitFactories.SplitterFitInterpBNR)
(in module PYME.localization.FitFactories.SplitterFitInterpNR)
(in module PYME.localization.FitFactories.SplitterMultifitSR)
(in module PYME.localization.FitFactories.SplitterObjFindR)
(in module PYME.localization.FitFactories.SplitterShiftEstFR)
FitResultR() (in module PYME.localization.FitFactories.DumbellFitR)
fitResultsSource (class in PYME.IO.tabular)
fitTask (class in PYME.localization.remFitBuf)
fitter (class in PYME.DSView.modules.profileFitting)
fitTestJig (class in PYME.localization.Test.fitTestJig)
(class in PYME.localization.Test.fitTestJigSCMOS)
(class in PYME.localization.Test.fitTestJigWC)
FitTrace() (in module PYME.Analysis.BleachProfile.fitRecover)
fixEMGain() (in module PYME.Analysis.MetaData)
flF2() (in module PYME.Analysis.BleachProfile.deMod)
flF2Mod() (in module PYME.Analysis.BleachProfile.deMod)
flFpow() (in module PYME.Analysis.BleachProfile.deMod)
flFsq() (in module PYME.Analysis.BleachProfile.deMod)
flFsq1() (in module PYME.Analysis.BleachProfile.deMod)
flipSecondaryAxis() (PYME.DSView.modules.blobMeasure.DataBlock method)
FloatListParam (class in PYME.localization.MetaDataEdit)
FloatPage() (PYME.contrib.auiFloatBook.AuiNotebookWithFloatingPages method)
FloatParam (class in PYME.localization.MetaDataEdit)
flow_gray() (in module PYME.misc.extraCMaps)
flowImage (PYME.DSView.modules.flowView.FlowView attribute)
FlowView (class in PYME.DSView.modules.flowView)
flush() (PYME.contrib.lzw.Encoder method)
FlushBuffer() (PYME.Acquire.HTTPHDFSpooler.Spooler method)
(PYME.Acquire.HTTPSpooler.Spooler method)
(PYME.Acquire.QueueSpooler.Spooler method)
(PYME.Acquire.Spooler.Spooler method)
flushMetaData() (PYME.ParallelTasks.HDFTaskQueue.HDFResultsTaskQueue method)
(PYME.ParallelTasks.HDFTaskQueue.HDFTaskQueue method)
fmtSlicesUsed() (in module PYME.localization.FitFactories.fitCommon)
fold() (in module PYME.Analysis.angleFilter)
Fold() (PYME.ui.autoFoldPanel.foldingPane method)
foldButton (class in PYME.ui.autoFoldPanel)
foldElement (class in PYME.ui.autoFoldPanel)
foldingPane (class in PYME.ui.autoFoldPanel)
foldPanel (class in PYME.ui.autoFoldPanel)
foldX() (in module PYME.Analysis.points.multiview)
format (PYME.misc.TiffImagePlugin.TiffImageFile attribute)
format() (PYME.util.mProfile.colorize_db_t.Parser method)
format_description (PYME.misc.TiffImagePlugin.TiffImageFile attribute)
formField() (PYME.localization.MetaDataEdit.BoolFloatParam method)
(PYME.localization.MetaDataEdit.BoolParam method)
(PYME.localization.MetaDataEdit.ChoiceParam method)
(PYME.localization.MetaDataEdit.FilenameParam method)
(PYME.localization.MetaDataEdit.FloatListParam method)
(PYME.localization.MetaDataEdit.FloatParam method)
(PYME.localization.MetaDataEdit.IntParam method)
(PYME.localization.MetaDataEdit.RangeParam method)
(PYME.localization.MetaDataEdit.StringParam method)
FORWARDS (PYME.Acquire.stackSettings.StackSettings attribute)
FourierPropagator (class in PYME.Analysis.PSFGen.fourier)
(in module PYME.Analysis.PSFGen.fourierHNA)
FourierPropagatorClipHNA (class in PYME.Analysis.PSFGen.fourierHNA)
FourierPropagatorHNA (class in PYME.Analysis.PSFGen.fourierHNA)
FractionalThreshold (class in PYME.recipes.processing)
frameCOI() (PYME.Acquire.Utils.vibrationAnalysis.VibrAnal method)
framesToTime() (in module PYME.Analysis.piecewiseMapping)
FrameWrangler (class in PYME.Acquire.frameWrangler)
from_module_list() (PYME.recipes.base.ModuleCollection class method)
fromJSON() (PYME.recipes.base.ModuleCollection class method)
fromMD() (PYME.recipes.base.ModuleCollection class method)
fromMDFile() (PYME.localization.Test.fitTestJig.fitTestJig class method)
(PYME.localization.Test.fitTestJigSCMOS.fitTestJig class method)
(PYME.localization.Test.fitTestJigWC.fitTestJig class method)
FromPoint() (PYME.localization.FitFactories.AstigGaussFitFR.GaussianFitFactory method)
(PYME.localization.FitFactories.AstigGaussGPUFitFR.GaussianFitFactory method)
(PYME.localization.FitFactories.DumbellFitR.DumbellFitFactory method)
(PYME.localization.FitFactories.FFBase.FFBase method)
(PYME.localization.FitFactories.Gauss3DFitR.Gauss3dFitFactory method)
(PYME.localization.FitFactories.GaussFitConstrR.GaussianFitFactory method)
(PYME.localization.FitFactories.InterpFitR.PSFFitFactory method)
(PYME.localization.FitFactories.InterpFitWFR.WFPSFFitFactory method)
(PYME.localization.FitFactories.LatFitCOIR.COIFitFactory method)
(PYME.localization.FitFactories.LatGaussFitFR.GaussianFitFactory method)
(PYME.localization.FitFactories.LatObjFindFR.GaussianFitFactory method)
(PYME.localization.FitFactories.LatPSFFitR.PSFFitFactory method)
(PYME.localization.FitFactories.PRInterpFitQR.PSFFitFactory method)
(PYME.localization.FitFactories.PRInterpFitR.PSFFitFactory method)
(PYME.localization.FitFactories.SpecGaussFitFR.GaussianFitFactory method)
(PYME.localization.FitFactories.SplitterFitCOIR.COIFitFactory method)
(PYME.localization.FitFactories.SplitterFitFNR.GaussianFitFactory method)
(PYME.localization.FitFactories.SplitterFitFusionR.GaussianFitFactory method)
(PYME.localization.FitFactories.SplitterFitInterpBNR.InterpFitFactory method)
(PYME.localization.FitFactories.SplitterFitInterpNR.InterpFitFactory method)
(PYME.localization.FitFactories.SplitterObjFindR.GaussianFitFactory method)
(PYME.localization.FitFactories.SplitterROIExtractNR.GaussianFitFactory method)
(PYME.localization.FitFactories.SplitterShiftEstFR.GaussianFitFactory method)
FromPoints() (PYME.localization.FitFactories.FFBase.FFBase method)
fromYAML() (PYME.recipes.base.ModuleCollection class method)
fstat (PYME.contrib.gohlke.tifffile.TIFFfile attribute)

G

gamma() (in module PYME.Analysis.multicolourMeta)
(in module PYME.Analysis.points.DeClump.deClumpGUI)
(in module PYME.Analysis.points.EdgeDB.edgeTest)
(in module PYME.Analysis.points.QuadTree)
(in module PYME.Analysis.points.QuadTree.QTrend)
(in module PYME.Analysis.points.QuadTree.rendQT)
(in module PYME.Analysis.points.twoColourPlot)
(in module PYME.Deconv.deccs_mc)
(in module PYME.localization.FitFactories.SplitterObjFindR)
(in module PYME.localization.FitFactories.SplitterShiftEstFR)
(in module PYME.localization.Test.fitTestJig)
(in module PYME.localization.Test.fitTestJigWC)
(in module PYME.localization.twist)
(in module PYME.misc.aniso)
(in module PYME.misc.facsPlot)
(in module PYME.misc.kdFit)
Gauss2D() (in module PYME.LMVis.rendGauss)
(in module PYME.LMVis.segmentLL)
(in module PYME.LMVis.visHelpers)
Gauss3d() (in module PYME.LMVis.visHelpers)
Gauss3dFitFactory (class in PYME.localization.FitFactories.Gauss3DFitR)
Gauss3dFitResultR() (in module PYME.localization.FitFactories.Gauss3DFitR)
GaussFitResult (class in PYME.localization.FitFactories.Gauss3DFitR)
Gaussian3DRenderer (class in PYME.LMVis.renderers)
GaussianFilter (class in PYME.recipes.filters)
GaussianFitFactory (class in PYME.localization.FitFactories.AstigGaussFitFR)
(class in PYME.localization.FitFactories.AstigGaussGPUFitFR)
(class in PYME.localization.FitFactories.GaussFitConstrR)
(class in PYME.localization.FitFactories.GaussMultifitLinesR)
(class in PYME.localization.FitFactories.GaussMultifitR)
(class in PYME.localization.FitFactories.GaussMultifitSR)
(class in PYME.localization.FitFactories.LatGaussFitFR)
(class in PYME.localization.FitFactories.LatObjFindFR)
(class in PYME.localization.FitFactories.SpecGaussFitFR)
(class in PYME.localization.FitFactories.SplitterFitFNR)
(class in PYME.localization.FitFactories.SplitterFitFusionR)
(class in PYME.localization.FitFactories.SplitterMultifitSR)
(class in PYME.localization.FitFactories.SplitterObjFindR)
(class in PYME.localization.FitFactories.SplitterROIExtractNR)
(class in PYME.localization.FitFactories.SplitterShiftEstFR)
GaussianFitResultR() (in module PYME.localization.FitFactories.AstigGaussFitFR)
(in module PYME.localization.FitFactories.AstigGaussGPUFitFR)
(in module PYME.localization.FitFactories.GaussFitConstrR)
(in module PYME.localization.FitFactories.GaussMultifitLinesR)
(in module PYME.localization.FitFactories.GaussMultifitR)
(in module PYME.localization.FitFactories.GaussMultifitSR)
(in module PYME.localization.FitFactories.LatGaussFitFR)
(in module PYME.localization.FitFactories.LatObjFindFR)
(in module PYME.localization.FitFactories.SpecGaussFitFR)
(in module PYME.localization.FitFactories.SplitterFitFNR)
(in module PYME.localization.FitFactories.SplitterFitFusionR)
(in module PYME.localization.FitFactories.SplitterMultifitSR)
(in module PYME.localization.FitFactories.SplitterObjFindR)
(in module PYME.localization.FitFactories.SplitterShiftEstFR)
GaussianRenderer (class in PYME.LMVis.renderers)
gaussKernel() (in module PYME.LMVis.rendGauss)
gen2DMask() (in module PYME.Analysis.annealThresh)
gen2DTriangsTF() (in module PYME.LMVis.gen3DTriangs)
gen3DBlobs() (in module PYME.LMVis.gen3DTriangs)
gen3DTriangs() (in module PYME.LMVis.gen3DTriangs)
gen3DTriangsT() (in module PYME.LMVis.gen3DTriangs)
gen3DTriangsTF() (in module PYME.LMVis.gen3DTriangs)
gen3DTriangsTFC() (in module PYME.LMVis.gen3DTriangs)
Gen4PiPSF() (in module PYME.Analysis.PSFGen.fourierHNA)
gen_traces_from_speckles() (in module PYME.IO.FileUtils.readSpeckle)
GenAnalysisPanel() (PYME.DSView.modules.LMAnalysis.AnalysisSettingsView method)
GenAstigPSF() (in module PYME.Analysis.PSFGen.fourier)
(in module PYME.Analysis.PSFGen.fourierHNA)
genBeadImage() (in module PYME.Deconv.beadGen)
GenBesselPSF() (in module PYME.Analysis.PSFGen.fourierHNA)
GenBiplanePSF() (in module PYME.Analysis.PSFGen.fourierHNA)
GenBlobFindingPanel() (PYME.DSView.modules.blobFinding.blobFinder method)
GenBlobFitPanel() (PYME.DSView.modules.blobFinding.blobFinder method)
GenBlobPanel() (in module PYME.LMVis.triBlobs)
genClusterDataFilepath() (in module PYME.IO.FileUtils.nameUtils)
genClusterResultFileName() (in module PYME.IO.FileUtils.nameUtils)
GenColourPRIPSF() (in module PYME.Analysis.PSFGen.fourierHNA)
genContents() (PYME.DSView.modules.playback.PlayPanel method)
genCoords() (in module PYME.Analysis.angleFilter)
(PYME.Acquire.Utils.pointScanner.PointScanner method)
(PYME.Acquire.Utils.pointScanner.PointScanner3D method)
GenCubicPhasePSF() (in module PYME.Analysis.PSFGen.fourierHNA)
genCurves() (in module PYME.Analysis.PSFGen.genCRBcurves)
genDark() (in module PYME.Analysis.deTile)
genDataFileID() (in module PYME.IO.FileUtils.fileID)
genDataSourceID() (in module PYME.IO.FileUtils.fileID)
genDefaultMask() (in module PYME.Analysis.annealThresh)
GenDHPSF() (in module PYME.Analysis.PSFGen.fourierHNA)
genEdgeDB() (in module PYME.LMVis.visHelpers)
Generate() (PYME.LMVis.renderers.ColourRenderer method)
(PYME.LMVis.renderers.CurrentRenderer method)
generate() (PYME.recipes.base.OutputModule method)
generate_a_pyrex_source() (in module PYME.misc.cython_numpy_monkey)
GenerateBacklashCorrPMFromEventList() (in module PYME.Analysis.piecewiseMapping)
GenerateDataGrid() (PYME.LMVis.importTextDialog.ImportTextDialog method)
GeneratedImage() (in module PYME.IO.image)
GenerateGUI() (PYME.LMVis.renderers.ColourRenderer method)
(PYME.LMVis.renderers.CurrentRenderer method)
GeneratePMFromEventList() (in module PYME.Analysis.piecewiseMapping)
GeneratePMFromProtocolEvents() (in module PYME.Analysis.piecewiseMapping)
Generator (class in PYME.LMVis.Extras.pointSetGeneration)
genFileID() (in module PYME.IO.FileUtils.fileID)
genFitImage() (in module PYME.localization.FitFactories.InterpFitR)
(in module PYME.localization.FitFactories.PRInterpFitQR)
(in module PYME.localization.FitFactories.PRInterpFitR)
(in module PYME.localization.FitFactories.SplitterFitFNR)
(in module PYME.localization.FitFactories.SplitterFitFusionR)
(in module PYME.localization.FitFactories.SplitterFitInterpBNR)
(in module PYME.localization.FitFactories.SplitterFitInterpNR)
GenFitStatusPanel() (PYME.DSView.modules.LMAnalysis.LMAnalyser2 method)
GenFlowPanel() (PYME.DSView.modules.flowView.FlowView method)
genFnl() (in module PYME.IO.FileUtils.fnlGen)
genFrameID() (in module PYME.IO.FileUtils.fileID)
genGaussPhotonStats() (PYME.DSView.fitInfo.FitInfoPanel method)
genHDFDataFilepath() (in module PYME.IO.FileUtils.nameUtils)
GenHist() (PYME.ui.fastGraph.FastGraphPanel method)
(PYME.ui.histLimits.HistLimitPanel method)
GenICPRIPSF() (in module PYME.Analysis.PSFGen.fourierHNA)
genIm() (in module PYME.Analysis.Colocalisation.colocScaleDep)
(PYME.LMVis.renderers.CurrentRenderer method)
(PYME.LMVis.renderers.Gaussian3DRenderer method)
(PYME.LMVis.renderers.GaussianRenderer method)
(PYME.LMVis.renderers.Histogram3DRenderer method)
(PYME.LMVis.renderers.HistogramRenderer method)
(PYME.LMVis.renderers.LHoodRenderer method)
(PYME.LMVis.renderers.QuadTreeRenderer method)
(PYME.LMVis.renderers.Triangle3DRenderer method)
(PYME.LMVis.renderers.TriangleRenderer method)
(PYME.LMVis.renderers.TriangleRendererW method)
GenImageDialog (class in PYME.LMVis.genImageDialog)
genImageID() (in module PYME.IO.FileUtils.fileID)
genImageTime() (in module PYME.IO.FileUtils.fileID)
genImR() (in module PYME.Analysis.Colocalisation.colocScaleDep)
genImR2() (in module PYME.Analysis.Colocalisation.colocScaleDep)
genIndexAndLabels() (in module PYME.Analysis.moments)
genMetaDataFromSourceAndMDH() (in module PYME.Analysis.MetaData)
GenPlayPanel() (PYME.DSView.modules.playback.player method)
genPlots() (in module PYME.Analysis.Colocalisation.colocScaleDep)
GenPointFindingPanel() (PYME.DSView.modules.LMAnalysis.AnalysisSettingsView method)
GenPointsPanel() (in module PYME.LMVis.pointSettingsPanel)
GenPRIEField() (in module PYME.Analysis.PSFGen.fourierHNA)
GenPRIPSF() (in module PYME.Analysis.PSFGen.fourier)
(in module PYME.Analysis.PSFGen.fourierHNA)
GenPSFPanel() (PYME.DSView.modules.psfExtraction.psfExtractor method)
GenQuads() (PYME.LMVis.pipeline.Pipeline method)
GenQuadTreePanel() (in module PYME.LMVis.quadTreeSettings)
GenR3PSF() (in module PYME.Analysis.PSFGen.fourierHNA)
genResultDirectoryPath() (in module PYME.IO.FileUtils.nameUtils)
genResultFileName() (in module PYME.IO.FileUtils.nameUtils)
genResultsFileID() (in module PYME.IO.FileUtils.fileID)
genResultsText() (PYME.DSView.fitInfo.FitInfoPanel method)
genRGBImage() (in module PYME.Analysis.points.twoColour)
GenRunPositions() (PYME.Acquire.Utils.fastTiler.fastRectTiler method)
GenSAAstigPSF() (in module PYME.Analysis.PSFGen.fourierHNA)
GenSABesselPSF() (in module PYME.Analysis.PSFGen.fourierHNA)
GenSAPRIPSF() (in module PYME.Analysis.PSFGen.fourierHNA)
GenSAPSF() (in module PYME.Analysis.PSFGen.fourierHNA)
genSequenceID() (in module PYME.Acquire.HTTPSpooler)
GenShiftedPSF() (in module PYME.Analysis.PSFGen.fourier)
(in module PYME.Analysis.PSFGen.fourierHNA)
genShiftFieldDirectoryPath() (in module PYME.IO.FileUtils.nameUtils)
genShiftVectorField() (in module PYME.Analysis.points.twoColour)
genShiftVectorFieldLinear() (in module PYME.Analysis.points.twoColour)
genShiftVectorFieldMC() (in module PYME.Analysis.points.twoColour)
genShiftVectorFieldQ() (in module PYME.Analysis.points.twoColour)
genShiftVectorFieldQuad() (in module PYME.Analysis.points.twoColour)
genShiftVectorFieldQuadz() (in module PYME.Analysis.points.twoColour)
genShiftVectorFieldQz() (in module PYME.Analysis.points.twoColour)
genShiftVectorFieldSpline() (in module PYME.Analysis.points.twoColour)
genShiftVectors() (in module PYME.Analysis.points.twoColour)
GenStartMetadata() (PYME.Acquire.microscope.microscope method)
genStartMetadata() (PYME.Acquire.ui.AnalysisSettingsUI.AnalysisSettings method)
genStartParams() (PYME.misc.coverslipGeometries.circGeom method)
genStatus() (PYME.Acquire.microscope.microscope method)
GenStatusText() (in module PYME.LMVis.statusLog)
GenStripePRIPSF() (in module PYME.Analysis.PSFGen.fourier)
(in module PYME.Analysis.PSFGen.fourierHNA)
genTraces() (in module PYME.Analysis.BleachProfile.intensProf)
genTracesDE() (in module PYME.Analysis.BleachProfile.intensProf)
GenTrackingPanel() (PYME.DSView.modules.particleTracking.ParticleTrackingView method)
GenWidefieldAP() (in module PYME.Analysis.PSFGen.fourier)
(in module PYME.Analysis.PSFGen.fourierHNA)
GenWidefieldAPA() (in module PYME.Analysis.PSFGen.fourierHNA)
GenWidefieldPSF() (in module PYME.Analysis.PSFGen.fourier)
(in module PYME.Analysis.PSFGen.fourierHNA)
GenWidefieldPSFA() (in module PYME.Analysis.PSFGen.fourierHNA)
GenZernikeDAPSF() (in module PYME.Analysis.PSFGen.fourierHNA)
GenZernikeDPSF() (in module PYME.Analysis.PSFGen.fourierHNA)
GenZernikePSF() (in module PYME.Analysis.PSFGen.fourier)
(in module PYME.Analysis.PSFGen.fourierHNA)
geom (class in PYME.misc.coverslipGeometries)
geom_depth (PYME.DSView.modules.blobMeasure.DataBlock attribute)
geom_length (PYME.DSView.modules.blobMeasure.DataBlock attribute)
geom_width (PYME.DSView.modules.blobMeasure.DataBlock attribute)
geometric() (in module PYME.Analysis.multicolourMeta)
(in module PYME.Analysis.points.DeClump.deClumpGUI)
(in module PYME.Analysis.points.EdgeDB.edgeTest)
(in module PYME.Analysis.points.QuadTree)
(in module PYME.Analysis.points.QuadTree.QTrend)
(in module PYME.Analysis.points.QuadTree.rendQT)
(in module PYME.Analysis.points.twoColourPlot)
(in module PYME.Deconv.deccs_mc)
(in module PYME.localization.FitFactories.SplitterObjFindR)
(in module PYME.localization.FitFactories.SplitterShiftEstFR)
(in module PYME.localization.Test.fitTestJig)
(in module PYME.localization.Test.fitTestJigWC)
(in module PYME.localization.twist)
(in module PYME.misc.aniso)
(in module PYME.misc.facsPlot)
(in module PYME.misc.kdFit)
get() (in module PYME.config)
(PYME.Analysis.points.QuadTree.pointQT.qtBranchNode method)
(PYME.Analysis.points.QuadTree.pointQT.qtLeafNode method)
(PYME.Analysis.points.QuadTree.pointQTF.qtBranchNode method)
(PYME.Analysis.points.QuadTree.pointQTF.qtLeafNode method)
(PYME.misc.TiffImagePlugin.ImageFileDirectory method)
get3DIsosurf() (PYME.DSView.modules.blobMeasure.BlobObject method)
get_advertised_services() (PYME.misc.pyme_zeroconf.ZCListener method)
(PYME.misc.pyme_zeroconf.ZeroConfNS method)
get_all_glasses() (in module PYME.misc.read_agf)
get_canvas() (PYME.DSView.modules.graphViewPanel.MyNavigationToolbar method)
(PYME.DSView.modules.pupilView.MyNavigationToolbar method)
get_channel_column() (PYME.IO.tabular.colourFilter method)
get_channel_ds() (PYME.IO.tabular.colourFilter method)
get_cleaned_module_list() (PYME.recipes.base.ModuleCollection method)
get_colour_chans() (PYME.IO.tabular.colourFilter class method)
get_custom_protocols() (in module PYME.config)
get_frame() (PYME.IO.dcimg.DCIMGFile method)
get_free_space() (in module PYME.IO.FileUtils.freeSpace)
get_index() (in module PYME.misc.read_agf)
get_info() (PYME.misc.pyme_zeroconf.ZCListener method)
get_init_filename() (in module PYME.config)
get_local_path() (in module PYME.IO.clusterIO)
get_ns() (in module PYME.IO.clusterIO)
get_num_slices() (PYME.IO.dcimg.DCIMGFile method)
get_plugins() (in module PYME.config)
get_profile_stats() (in module PYME.util.mProfile.tProfile)
get_protocol() (in module PYME.Acquire.protocol)
get_protocol_list() (in module PYME.Acquire.protocol)
get_settings() (PYME.LMVis.genImageDialog.GenImageDialog method)
get_slice_shape() (PYME.IO.dcimg.DCIMGFile method)
get_state() (in module PYME.Analysis.multicolourMeta)
(in module PYME.Analysis.points.DeClump.deClumpGUI)
(in module PYME.Analysis.points.EdgeDB.edgeTest)
(in module PYME.Analysis.points.QuadTree)
(in module PYME.Analysis.points.QuadTree.QTrend)
(in module PYME.Analysis.points.QuadTree.rendQT)
(in module PYME.Analysis.points.twoColourPlot)
(in module PYME.Deconv.deccs_mc)
(in module PYME.localization.FitFactories.SplitterObjFindR)
(in module PYME.localization.FitFactories.SplitterShiftEstFR)
(in module PYME.localization.Test.fitTestJig)
(in module PYME.localization.Test.fitTestJigWC)
(in module PYME.localization.twist)
(in module PYME.misc.aniso)
(in module PYME.misc.facsPlot)
(in module PYME.misc.kdFit)
get_status() (PYME.ParallelTasks.dataserver_wsgi.dataserver method)
(PYME.ParallelTasks.HTTPDataServer.PYMEHTTPRequestHandler method)
get_status_msg() (PYME.Acquire.ExecTools.BGInitTask method)
get_tile() (PYME.Analysis.deTile.ImagePyramid method)
GetActiveCameraName() (PYME.Acquire.microscope.microscope method)
GetActiveChans() (PYME.DSView.displayOptions.DisplayOpts method)
getAll() (PYME.Analysis.points.QuadTree.pointQT.qtNode method)
(PYME.Analysis.points.QuadTree.pointQTF.qtNode method)
getBackground() (PYME.Analysis.buffers.backgroundBuffer method)
(PYME.Analysis.buffers.backgroundBufferM method)
GetBackground() (PYME.Deconv.deconvDialogs.DeconvSettingsDialog method)
getBackground() (PYME.IO.DataSources.BGSDataSource.backgroundBuffer method)
(PYME.IO.DataSources.BGSDataSource.backgroundBufferM method)
GetBeadRadius() (PYME.Deconv.deconvDialogs.DeconvSettingsDialog method)
getBestScanner() (in module PYME.Acquire.zScanner)
GetBins() (PYME.DSView.modules.coloc.ColocSettingsDialog method)
(PYME.DSView.modules.fourierRingCorrelation.ColocSettingsDialog method)
getBlobs() (PYME.LMVis.pipeline.Pipeline method)
GetBlocking() (PYME.Deconv.deconvDialogs.DeconvSettingsDialog method)
GetBlockSize() (PYME.Deconv.deconvDialogs.DeconvSettingsDialog method)
GetBoundingRect() (PYME.Acquire.Utils.fastTiler.fastRectTiler method)
getCalibrationDir() (in module PYME.IO.FileUtils.nameUtils)
getCentroid() (PYME.Acquire.zScanner.zScanner method)
GetChanFilename() (PYME.DSView.modules.composite.ShiftmapSelectionDialog method)
getChannel() (in module PYME.Analysis.multicolourMeta)
GetChannel() (PYME.Deconv.deconvDialogs.DeconvSettingsDialog method)
getChannelPair() (in module PYME.Analysis.multicolourMeta)
GetChans() (PYME.DSView.modules.coloc.ColocSettingsDialog method)
(PYME.DSView.modules.fourierRingCorrelation.ColocSettingsDialog method)
GetChoices() (PYME.contrib.TextCtrlAutoComplete.TextCtrlAutoComplete method)
GetClumpRadiusMultiplier() (PYME.Analysis.points.DeClump.deClumpGUI.deClumpDialog method)
GetClumpRadiusVariable() (PYME.Analysis.points.DeClump.deClumpGUI.deClumpDialog method)
GetClumpTimeWindow() (PYME.Analysis.points.DeClump.deClumpGUI.deClumpDialog method)
GetColLabelValue() (PYME.LMVis.pipelineView.PipelineTable method)
(PYME.ui.recArrayView.RecArrayTable method)
GetCollapsedIconBitmap() (in module PYME.misc.fbpIcons)
GetCollapsedIconData() (in module PYME.misc.fbpIcons)
GetCollapsedIconImage() (in module PYME.misc.fbpIcons)
getColour() (PYME.LMVis.genImageDialog.GenImageDialog method)
getColourChans() (PYME.IO.tabular.colourFilter method)
GetColumnSorter() (PYME.contrib.listctrlMixins.ColumnSorterMixin method)
GetColumnWidths() (PYME.contrib.listctrlMixins.ColumnSorterMixin method)
getCompletedTask() (PYME.ParallelTasks.HDFTaskQueue.HDFResultsTaskQueue method)
(PYME.ParallelTasks.taskQueue.TaskQueue method)
(PYME.ParallelTasks.taskServerZC.TaskQueueSet method)
GetComputerName() (in module PYME.misc.computerName)
getCoords() (PYME.localization.FitFactories.Interpolators.CSInterpolator.CSInterpolator method)
(PYME.localization.FitFactories.Interpolators.CubeSInterpolatorP.CSInterpolator method)
(PYME.localization.FitFactories.Interpolators.CubicSplineInterpolator.CubicSplineInterpolator method)
(PYME.localization.FitFactories.Interpolators.LinearInterpolator.LinearInterpolator method)
(PYME.localization.FitFactories.Interpolators.LinearPInterpolatorP.LinearInterpolator method)
getCorrection() (in module PYME.Analysis.points.twoColour)
getDarkMap() (PYME.localization.remFitBuf.CameraInfoManager method)
getDataErrors() (in module PYME.localization.FitFactories.InterpFitR)
(in module PYME.localization.FitFactories.PRInterpFitQR)
(in module PYME.localization.FitFactories.PRInterpFitR)
(in module PYME.localization.FitFactories.SplitterFitInterpBNR)
(in module PYME.localization.FitFactories.SplitterFitInterpNR)
getDataSourceForFilename() (in module PYME.IO.DataSources)
GetDec() (PYME.recipes.processing.Deconvolve method)
(PYME.recipes.processing.DeconvolveMotionCompensating method)
GetDirection() (PYME.Acquire.stackSettings.StackSettings method)
getDirectorySize() (in module PYME.misc.dirSize)
getDistributorInfo() (in module PYME.ParallelTasks.distribution)
getEdb() (PYME.LMVis.pipeline.Pipeline method)
GetEndPos() (PYME.Acquire.stackSettings.StackSettings method)
getEntry() (PYME.Acquire.HTTPHDFSpooler.HttpSpoolMDHandler method)
(PYME.IO.MetaDataHandler.CachingMDHandler method)
(PYME.IO.MetaDataHandler.HDFMDHandler method)
(PYME.IO.MetaDataHandler.MDHandlerBase method)
(PYME.IO.MetaDataHandler.NestedClassMDHandler method)
(PYME.IO.MetaDataHandler.QueueMDHandler method)
(PYME.IO.MetaDataHandler.XMLMDHandler method)
getEntryNames() (PYME.Acquire.HTTPHDFSpooler.HttpSpoolMDHandler method)
(PYME.IO.MetaDataHandler.CachingMDHandler method)
(PYME.IO.MetaDataHandler.HDFMDHandler method)
(PYME.IO.MetaDataHandler.MDHandlerBase method)
(PYME.IO.MetaDataHandler.NestedClassMDHandler method)
(PYME.IO.MetaDataHandler.QueueMDHandler method)
(PYME.IO.MetaDataHandler.XMLMDHandler method)
getEvent() (PYME.ParallelTasks.httpSpoolTarget.H5File method)
getEvents() (PYME.IO.DataSources.AlignDataSource.DataSource method)
(PYME.IO.DataSources.BGSDataSource.DataSource method)
(PYME.IO.DataSources.BaseDataSource.BaseDataSource method)
(PYME.IO.DataSources.BioformatsDataSource.DataSource method)
(PYME.IO.DataSources.BufferedDataSource.DataSource method)
(PYME.IO.DataSources.ClusterPZFDataSource.DataSource method)
(PYME.IO.DataSources.DcimgDataSource.DataSource method)
(PYME.IO.DataSources.FlatFieldDataSource.DataSource method)
(PYME.IO.DataSources.HDFDataSource.DataSource method)
(PYME.IO.DataSources.HTTPDataSource.DataSource method)
(PYME.IO.DataSources.ImageSeriesDataSource.DataSource method)
(PYME.IO.DataSources.MultiviewDataSource.DataSource method)
(PYME.IO.DataSources.TQDataSource.DataSource method)
(PYME.IO.DataSources.TiffDataSource.DataSource method)
(PYME.IO.DataSources.UnsplitDataSource.DataSource method)
(PYME.ParallelTasks.httpSpoolTarget.H5File method)
GetExpandedIconBitmap() (in module PYME.misc.fbpIcons)
GetExpandedIconData() (in module PYME.misc.fbpIcons)
GetExpandedIconImage() (in module PYME.misc.fbpIcons)
getExternalEdges() (in module PYME.LMVis.gen3DTriangs)
GetFieldNames() (PYME.LMVis.importTextDialog.ImportMatDialog method)
(PYME.LMVis.importTextDialog.ImportTextDialog method)
getFile() (in module PYME.IO.clusterIO)
getFileMetadata() (in module PYME.IO.FileUtils.fileID)
getFileTags() (in module PYME.IO.FileUtils.fileID)
getFlatfieldMap() (PYME.localization.remFitBuf.CameraInfoManager method)
GetFormat() (PYME.IO.dataExporter.ExportDialog method)
getFPS() (PYME.Acquire.frameWrangler.FrameWrangler method)
getFrame() (PYME.Acquire.frameWrangler.FrameWrangler method)
(PYME.ParallelTasks.httpSpoolTarget.H5File method)
getFullExistingFilename() (in module PYME.IO.FileUtils.nameUtils)
getFullFilename() (in module PYME.IO.FileUtils.nameUtils)
GetGeometry() (in module PYME.misc.coverslipGeometries)
getGraph() (PYME.DSView.modules.blobMeasure.BlobObject method)
GetHandler (class in PYME.ParallelTasks.httpSpoolTarget)
getIconPath() (in module PYME.resources)
GetIgnoreZ() (PYME.DSView.modules.composite.CompositeDialog method)
GetImage() (PYME.Acquire.positionTracker.PositionTracker method)
getImage() (PYME.DSView.modules.blobMeasure.BlobObject method)
getImageTags() (in module PYME.IO.FileUtils.fileID)
getInfo() (PYME.IO.tabular.fitResultsSource method)
(PYME.IO.tabular.h5rDSource method)
(PYME.IO.tabular.h5rSource method)
(PYME.IO.tabular.hdfSource method)
(PYME.IO.tabular.matfileSource method)
(PYME.IO.tabular.randomSource method)
(PYME.IO.tabular.recArrayInput method)
(PYME.IO.tabular.textfileSource method)
getInRadius() (in module PYME.Analysis.points.QuadTree.pointQT)
(in module PYME.Analysis.points.QuadTree.pointQTF)
getIntCenter() (in module PYME.Analysis.PSFEst.extractImages)
GetInterp() (PYME.DSView.modules.composite.CompositeDialog method)
GetItemFullname() (PYME.ui.MetadataTree.MetadataPanel method)
getJitterScale() (PYME.LMVis.genImageDialog.GenImageDialog method)
getJitterScaleZ() (PYME.LMVis.genImageDialog.GenImageDialog method)
getJitterVariable() (PYME.LMVis.genImageDialog.GenImageDialog method)
getJitterVariableZ() (PYME.LMVis.genImageDialog.GenImageDialog method)
getLeaves() (PYME.Analysis.points.QuadTree.pointQT.qtBranchNode method)
(PYME.Analysis.points.QuadTree.pointQT.qtLeafNode method)
(PYME.Analysis.points.QuadTree.pointQTF.qtBranchNode method)
(PYME.Analysis.points.QuadTree.pointQTF.qtLeafNode method)
GetLimits() (PYME.ui.histLimits.HistLimitDialog method)
getLinkageCandidates() (PYME.Analysis.Tracking.tracking.Tracker method)
GetListCtrl() (PYME.contrib.TextCtrlAutoComplete.TextCtrlAutoComplete method)
getListCtrlSelection() (in module PYME.contrib.listctrlMixins)
getLUT() (in module PYME.DSView.arrayViewPanel)
getMappedResults() (PYME.IO.tabular.mappingFilter method)
GetMaster() (PYME.DSView.modules.composite.CompositeDialog method)
getMCProbability() (PYME.LMVis.genImageDialog.GenImageDialog method)
getMetadata() (PYME.IO.DataSources.ClusterPZFDataSource.DataSource method)
(PYME.IO.DataSources.HTTPDataSource.DataSource method)
(PYME.ParallelTasks.httpSpoolTarget.H5File method)
GetMethod() (PYME.Deconv.deconvDialogs.DeconvSettingsDialog method)
GetMixMatrix() (PYME.DSView.modules.unmixing.UnMixSettingsDlg method)
getModuleNames() (in module PYME.recipes.modules)
getMultiviewROIAtPoint() (PYME.localization.FitFactories.FFBase.FFBase method)
GetName() (PYME.DSView.modules.composite.ImageList method)
getNeighbourDists() (PYME.Analysis.points.EdgeDB.edges.EdgeDB method)
(PYME.LMVis.pipeline.Pipeline method)
getNewID() (in module PYME.DSView.modules.blobMeasure)
getNodeInfo() (in module PYME.ParallelTasks.distribution)
getNS() (in module PYME.misc.pyme_zeroconf)
GetNumberCols() (PYME.LMVis.pipelineView.PipelineTable method)
(PYME.ui.recArrayView.RecArrayTable method)
GetNumberComments() (PYME.LMVis.importTextDialog.ImportTextDialog method)
getNumberOpenTasks() (PYME.ParallelTasks.DSTaskQueue.DSTaskQueue method)
(PYME.ParallelTasks.HDFTaskQueue.HDFTaskQueue method)
(PYME.ParallelTasks.taskQueue.TaskQueue method)
(PYME.ParallelTasks.taskServerZC.TaskQueueSet method)
GetNumberRows() (PYME.LMVis.pipelineView.PipelineTable method)
(PYME.ui.recArrayView.RecArrayTable method)
getNumberTasksCompleted() (PYME.ParallelTasks.HDFTaskQueue.HDFResultsTaskQueue method)
(PYME.ParallelTasks.taskQueue.TaskQueue method)
(PYME.ParallelTasks.taskServerZC.TaskQueueSet method)
getNumberTasksInProgress() (PYME.ParallelTasks.taskQueue.TaskQueue method)
(PYME.ParallelTasks.taskServerZC.TaskQueueSet method)
GetNumIterationss() (PYME.Deconv.deconvDialogs.DeconvSettingsDialog method)
getNumQueueEvents() (PYME.ParallelTasks.HDFTaskQueue.HDFResultsTaskQueue method)
getNumSamples() (PYME.LMVis.genImageDialog.GenImageDialog method)
getNumSlices() (PYME.IO.DataSources.AlignDataSource.DataSource method)
(PYME.IO.DataSources.BGSDataSource.DataSource method)
(PYME.IO.DataSources.BaseDataSource.BaseDataSource method)
(PYME.IO.DataSources.BioformatsDataSource.DataSource method)
(PYME.IO.DataSources.BufferedDataSource.DataSource method)
(PYME.IO.DataSources.ClusterPZFDataSource.DataSource method)
(PYME.IO.DataSources.DcimgDataSource.DataSource method)
(PYME.IO.DataSources.FlatFieldDataSource.DataSource method)
(PYME.IO.DataSources.HDFDataSource.DataSource method)
(PYME.IO.DataSources.HTTPDataSource.DataSource method)
(PYME.IO.DataSources.ImageSeriesDataSource.DataSource method)
(PYME.IO.DataSources.MultiviewDataSource.DataSource method)
(PYME.IO.DataSources.TQDataSource.DataSource method)
(PYME.IO.DataSources.TiffDataSource.DataSource method)
(PYME.IO.DataSources.UnsplitDataSource.DataSource method)
getNumTasksProcessed() (PYME.ParallelTasks.taskServerZC.TaskQueueSet method)
GetOffset() (PYME.Deconv.deconvDialogs.DeconvSettingsDialog method)
(PYME.DSView.modules.unmixing.UnMixSettingsDlg method)
GetOpts() (PYME.DSView.arrayViewPanel.ArrayViewPanel method)
getOrDefault() (PYME.IO.MetaDataHandler.MDHandlerBase method)
GetPadding() (PYME.Deconv.deconvDialogs.DeconvSettingsDialog method)
GetPadSize() (PYME.Deconv.deconvDialogs.DeconvSettingsDialog method)
getPercentile() (PYME.Analysis.buffers.bgFrameBuffer method)
(PYME.IO.DataSources.BGSDataSource.bgFrameBuffer method)
getPerimeter() (in module PYME.LMVis.gen3DTriangs)
getPhotonNums() (in module PYME.Analysis.BleachProfile.kinModels)
GetPixelSize() (PYME.Acquire.microscope.microscope method)
getPixelSize() (PYME.LMVis.genImageDialog.GenImageDialog method)
GetPixelSize() (PYME.LMVis.importTextDialog.ImportTextDialog method)
getPoints() (PYME.LMVis.Extras.pointSetGeneration.FileSource method)
(PYME.LMVis.Extras.pointSetGeneration.ImageSource method)
(PYME.LMVis.Extras.pointSetGeneration.WormlikeSource method)
getPopupMenu() (PYME.contrib.listctrlMixins.ListCtrlSelectionManagerMix method)
GetPos() (PYME.Acquire.microscope.microscope method)
GetPosRange() (PYME.Acquire.microscope.microscope method)
GetPrevPos() (PYME.Acquire.stackSettings.StackSettings method)
getPrincipalAxis() (in module PYME.LMVis.objectMeasure)
getPSF() (in module PYME.Analysis.PSFEst.extractImages)
GetPSF() (PYME.Deconv.deconvDialogs.DeconvSettingsDialog method)
(PYME.recipes.processing.Deconvolve method)
getPSF3D() (in module PYME.Analysis.PSFEst.extractImages)
GetPSFFilename() (PYME.Deconv.deconvDialogs.DeconvSettingsDialog method)
getPSFSlice() (in module PYME.Analysis.PSFEst.extractImages)
getPZFFrame() (PYME.ParallelTasks.httpSpoolTarget.H5File method)
getQueueData() (PYME.ParallelTasks.DSTaskQueue.DSTaskQueue method)
(PYME.ParallelTasks.HDFTaskQueue.HDFResultsTaskQueue method)
(PYME.ParallelTasks.HDFTaskQueue.HDFTaskQueue method)
(PYME.ParallelTasks.taskQueue.TaskQueueWithData method)
(PYME.ParallelTasks.taskServerZC.TaskQueueSet method)
getQueueInfo() (in module PYME.ParallelTasks.distribution)
getQueueMetaData() (PYME.ParallelTasks.HDFTaskQueue.HDFResultsTaskQueue method)
(PYME.ParallelTasks.taskServerZC.TaskQueueSet method)
getQueueMetaDataKeys() (PYME.ParallelTasks.HDFTaskQueue.HDFResultsTaskQueue method)
(PYME.ParallelTasks.taskServerZC.TaskQueueSet method)
getQueueNames() (PYME.ParallelTasks.taskServerZC.TaskQueueSet method)
getRatio() (in module PYME.LMVis.dyeRatios)
getReducedFilename() (in module PYME.Acquire.HTTPSpooler)
GetRegion() (PYME.DSView.modules.blobMeasure.Measurements method)
GetRegularisationLambda() (PYME.Deconv.deconvDialogs.DeconvSettingsDialog method)
getRelFilename() (in module PYME.IO.FileUtils.nameUtils)
GetRemovePadding() (PYME.Deconv.deconvDialogs.DeconvSettingsDialog method)
getReqMemChans() (PYME.Acquire.frameWrangler.FrameWrangler method)
getRes() (PYME.localization.FitFactories.AstigGaussGPUFitFR.GaussianFitFactory method)
getROIAtPoint() (PYME.localization.FitFactories.FFBase.FFBase method)
getSampleData() (in module PYME.Acquire.sampleInformation)
getscalar() (PYME.misc.TiffImagePlugin.ImageFileDirectory method)
GetScanChannel() (PYME.Acquire.stackSettings.StackSettings method)
getSchematic() (PYME.DSView.modules.blobMeasure.BlobObject method)
getSchematic3D() (PYME.DSView.modules.blobMeasure.BlobObject method)
GetScrollPixelsPerUnit() (PYME.DSView.scrolledImagePanel.ScrolledImagePanel method)
GetSecondarySortValues() (PYME.contrib.listctrlMixins.ColumnSorterMixin method)
GetSelectedModule() (PYME.recipes.recipeGui.ModuleSelectionDialog method)
GetSelectedPage() (PYME.DSView.dsviewer.DSViewFrame method)
getSelection() (PYME.contrib.listctrlMixins.ListCtrlSelectionManagerMix method)
GetSelections() (PYME.DSView.modules.composite.CompositeDialog method)
GetSeqLength() (PYME.Acquire.stackSettings.StackSettings method)
GetShiftmap() (PYME.DSView.modules.composite.CompositeDialog method)
GetSimpleString() (PYME.IO.MetaDataHandler.MDHandlerBase method)
getSlice() (PYME.Analysis.buffers.dataBuffer method)
(PYME.IO.DataSources.AlignDataSource.DataSource method)
(PYME.IO.DataSources.BGSDataSource.DataSource method)
(PYME.IO.DataSources.BGSDataSource.dataBuffer method)
(PYME.IO.DataSources.BaseDataSource.BaseDataSource method)
(PYME.IO.DataSources.BioformatsDataSource.DataSource method)
(PYME.IO.DataSources.BufferedDataSource.DataSource method)
(PYME.IO.DataSources.ClusterPZFDataSource.DataSource method)
(PYME.IO.DataSources.DcimgDataSource.DataSource method)
(PYME.IO.DataSources.FlatFieldDataSource.DataSource method)
(PYME.IO.DataSources.HDFDataSource.DataSource method)
(PYME.IO.DataSources.HTTPDataSource.DataSource method)
(PYME.IO.DataSources.ImageSeriesDataSource.DataSource method)
(PYME.IO.DataSources.MultiviewDataSource.DataSource method)
(PYME.IO.DataSources.TQDataSource.DataSource method)
(PYME.IO.DataSources.TiffDataSource.DataSource method)
(PYME.IO.DataSources.UnsplitDataSource.DataSource method)
(PYME.ParallelTasks.HDFTaskQueue.dataBuffer method)
GetSliceSelection() (PYME.DSView.displayOptions.DisplayOpts method)
getSliceShape() (PYME.IO.DataSources.AlignDataSource.DataSource method)
(PYME.IO.DataSources.BGSDataSource.DataSource method)
(PYME.IO.DataSources.BaseDataSource.BaseDataSource method)
(PYME.IO.DataSources.BioformatsDataSource.DataSource method)
(PYME.IO.DataSources.BufferedDataSource.DataSource method)
(PYME.IO.DataSources.ClusterPZFDataSource.DataSource method)
(PYME.IO.DataSources.DcimgDataSource.DataSource method)
(PYME.IO.DataSources.FlatFieldDataSource.DataSource method)
(PYME.IO.DataSources.HDFDataSource.DataSource method)
(PYME.IO.DataSources.HTTPDataSource.DataSource method)
(PYME.IO.DataSources.ImageSeriesDataSource.DataSource method)
(PYME.IO.DataSources.MultiviewDataSource.DataSource method)
(PYME.IO.DataSources.TQDataSource.DataSource method)
(PYME.IO.DataSources.TiffDataSource.DataSource method)
(PYME.IO.DataSources.UnsplitDataSource.DataSource method)
getSmallDnArrowBitmap() (in module PYME.contrib.TextCtrlAutoComplete)
getSmallDnArrowData() (in module PYME.contrib.TextCtrlAutoComplete)
getSmallDnArrowImage() (in module PYME.contrib.TextCtrlAutoComplete)
getSmallUpArrowBitmap() (in module PYME.contrib.TextCtrlAutoComplete)
getSmallUpArrowData() (in module PYME.contrib.TextCtrlAutoComplete)
getSmallUpArrowImage() (in module PYME.contrib.TextCtrlAutoComplete)
getSoftRender() (PYME.LMVis.genImageDialog.GenImageDialog method)
GetSortImages() (PYME.contrib.listctrlMixins.ColumnSorterMixin method)
(PYME.contrib.TextCtrlAutoComplete.TextCtrlAutoComplete method)
GetSortState() (PYME.contrib.listctrlMixins.ColumnSorterMixin method)
getSplitROIAtPoint() (PYME.localization.FitFactories.FFBase.FFBase method)
GetStartMode() (PYME.Acquire.stackSettings.StackSettings method)
getStartParameters() (in module PYME.localization.FitFactories.zEstimators.astigEstimator)
(in module PYME.localization.FitFactories.zEstimators.biplaneEstimator)
(in module PYME.localization.FitFactories.zEstimators.priEstimator)
GetStartPos() (PYME.Acquire.stackSettings.StackSettings method)
getStatus() (in module PYME.IO.clusterIO)
GetStatusText() (PYME.DSView.modules.LMAnalysis.LMAnalyser2 method)
GetStepSize() (PYME.Acquire.stackSettings.StackSettings method)
getTableData() (PYME.IO.h5rFile.H5RFile method)
GetTags() (PYME.Acquire.positionTracker.PositionTracker method)
getTask() (PYME.ParallelTasks.DSTaskQueue.DSTaskQueue method)
(PYME.ParallelTasks.HDFTaskQueue.HDFTaskQueue method)
(PYME.ParallelTasks.taskQueue.TaskQueue method)
(PYME.ParallelTasks.taskServerZC.TaskQueueSet method)
getTasks() (PYME.ParallelTasks.DSTaskQueue.DSTaskQueue method)
(PYME.ParallelTasks.HDFTaskQueue.HDFTaskQueue method)
(PYME.ParallelTasks.taskQueue.TaskQueue method)
(PYME.ParallelTasks.taskQueue.TaskQueueWithData method)
(PYME.ParallelTasks.taskServerZC.TaskQueueSet method)
getTextFileLock() (in module PYME.ParallelTasks.dataserver_wsgi)
(in module PYME.ParallelTasks.HTTPDataServer)
getThumbnail() (in module PYME.IO.FileUtils.thumbnailDatabase)
GetTrack() (PYME.Acquire.positionTracker.PositionTracker method)
getTriangles() (PYME.LMVis.pipeline.Pipeline method)
getURL() (in module PYME.DSView.htmlServe)
(PYME.Acquire.HTTPHDFSpooler.Spooler method)
(PYME.Acquire.HTTPSpooler.Spooler method)
getUsername() (in module PYME.IO.FileUtils.nameUtils)
GetValue() (PYME.LMVis.pipelineView.PipelineTable method)
(PYME.ui.histLimits.HistLimitPanel method)
(PYME.ui.recArrayView.RecArrayTable method)
getVarianceMap() (PYME.localization.remFitBuf.CameraInfoManager method)
GetVarName() (PYME.LMVis.importTextDialog.ImportMatDialog method)
getVertexEdgeLengths() (PYME.Analysis.points.EdgeDB.edges.EdgeDB method)
getVertexNeighbours() (PYME.Analysis.points.EdgeDB.edges.EdgeDB method)
GetVoxX() (PYME.DSView.voxSizeDialog.VoxSizeDialog method)
GetVoxY() (PYME.DSView.voxSizeDialog.VoxSizeDialog method)
GetVoxZ() (PYME.DSView.voxSizeDialog.VoxSizeDialog method)
getWorkerFPS() (PYME.ParallelTasks.taskServerZC.TaskQueueSet method)
getWorkerNames() (PYME.ParallelTasks.taskServerZC.TaskQueueSet method)
getXML() (PYME.IO.MetaDataHandler.OMEXMLMDHandler method)
GetXSlice() (PYME.IO.dataExporter.ExportDialog method)
GetYSlice() (PYME.IO.dataExporter.ExportDialog method)
getZ() (in module PYME.localization.twist)
getZBounds() (PYME.LMVis.genImageDialog.GenImageDialog method)
GetZSlice() (PYME.IO.dataExporter.ExportDialog method)
getZSliceThickness() (PYME.LMVis.genImageDialog.GenImageDialog method)
Glass (class in PYME.misc.zemax)
glob_test() (in module PYME.Analysis.PSFEst.psfQuality)
globalLHood() (PYME.LMVis.segmentLL.segmenter method)
go() (PYME.Deconv.tq_block_dec.blocking_deconv method)
goalfcn() (in module PYME.Analysis.BleachProfile.kinModels)
GrabImage() (PYME.DSView.arrayViewPanel.ArrayViewPanel method)
GrabPNG() (PYME.DSView.arrayViewPanel.ArrayViewPanel method)
Gradient2D (class in PYME.recipes.processing)
Gradient3D (class in PYME.recipes.processing)
graphs() (PYME.DSView.modules.blobMeasure.Measurements method)
GraphViewPanel (class in PYME.DSView.modules.fastGraphPanel)
(class in PYME.DSView.modules.graphViewPanel)
(class in PYME.DSView.modules.pupilView)
GreyDilation (class in PYME.recipes.processing)
GreyErosion (class in PYME.recipes.processing)
Group() (in module PYME.misc.mock_traitsui)
gt() (in module PYME.Analysis.BleachProfile.intensProf)
gt_mod() (in module PYME.Analysis.BleachProfile.intensProf)
guess_type() (PYME.ParallelTasks.dataserver_wsgi.dataserver method)
guessFlat() (in module PYME.Analysis.deTile)
guessH5RImageID() (in module PYME.IO.FileUtils.fileID)
guessUserID() (in module PYME.IO.FileUtils.fileID)
GuiGetDirList() (in module PYME.IO.FileUtils.fnlGen)
GUIInitTask (class in PYME.Acquire.ExecTools)
gumbel() (in module PYME.Analysis.multicolourMeta)
(in module PYME.Analysis.points.DeClump.deClumpGUI)
(in module PYME.Analysis.points.EdgeDB.edgeTest)
(in module PYME.Analysis.points.QuadTree)
(in module PYME.Analysis.points.QuadTree.QTrend)
(in module PYME.Analysis.points.QuadTree.rendQT)
(in module PYME.Analysis.points.twoColourPlot)
(in module PYME.Deconv.deccs_mc)
(in module PYME.localization.FitFactories.SplitterObjFindR)
(in module PYME.localization.FitFactories.SplitterShiftEstFR)
(in module PYME.localization.Test.fitTestJig)
(in module PYME.localization.Test.fitTestJigWC)
(in module PYME.localization.twist)
(in module PYME.misc.aniso)
(in module PYME.misc.facsPlot)
(in module PYME.misc.kdFit)

H

H5Exporter (class in PYME.IO.dataExporter)
H5File (class in PYME.ParallelTasks.httpSpoolTarget)
h5rDSource (class in PYME.IO.tabular)
H5RFile (class in PYME.IO.h5rFile)
h5rSource (class in PYME.IO.tabular)
handin() (PYME.ParallelTasks.distributor.CPDistributor method)
(PYME.ParallelTasks.distributor.TaskQueue method)
(PYME.ParallelTasks.nodeserver.CPNodeServer method)
has_key() (PYME.misc.TiffImagePlugin.ImageFileDirectory method)
hashString32() (in module PYME.misc.hash32)
HDFMDHandler (class in PYME.IO.MetaDataHandler)
HDFResultsTaskQueue (class in PYME.ParallelTasks.HDFTaskQueue)
hdfSource (class in PYME.IO.tabular)
HDFTaskQueue (class in PYME.ParallelTasks.HDFTaskQueue)
header_dtype (in module PYME.IO.PZFFormat)
height() (PYME.IO.image.ImageBounds method)
(PYME.LMVis.visHelpersMin.ImageBounds method)
hide() (PYME.DSView.modules.blobMeasure.Measurements method)
hide_in_overview (PYME.recipes.base.ModuleBase attribute)
HistLimitDialog (class in PYME.ui.histLimits)
HistLimitEditDialog (class in PYME.ui.histLimits)
HistLimitPanel (class in PYME.ui.histLimits)
Histogram (class in PYME.recipes.measurement)
Histogram3DRenderer (class in PYME.LMVis.renderers)
HistogramRenderer (class in PYME.LMVis.renderers)
hls_to_rgb() (in module PYME.misc.colorsys)
hmod() (in module PYME.Analysis.BleachProfile.kinModels)
hook() (in module PYME.update_version)
hsv_to_rgb() (in module PYME.misc.colorsys)
HTTPRecipePusher (class in PYME.ParallelTasks.HTTPTaskPusher)
HttpSpoolMDHandler (class in PYME.Acquire.HTTPHDFSpooler)
HTTPTaskPusher (class in PYME.ParallelTasks.HTTPTaskPusher)
HWNotPresent
hypergeometric() (in module PYME.Analysis.multicolourMeta)
(in module PYME.Analysis.points.DeClump.deClumpGUI)
(in module PYME.Analysis.points.EdgeDB.edgeTest)
(in module PYME.Analysis.points.QuadTree)
(in module PYME.Analysis.points.QuadTree.QTrend)
(in module PYME.Analysis.points.QuadTree.rendQT)
(in module PYME.Analysis.points.twoColourPlot)
(in module PYME.Deconv.deccs_mc)
(in module PYME.localization.FitFactories.SplitterObjFindR)
(in module PYME.localization.FitFactories.SplitterShiftEstFR)
(in module PYME.localization.Test.fitTestJig)
(in module PYME.localization.Test.fitTestJigWC)
(in module PYME.localization.twist)
(in module PYME.misc.aniso)
(in module PYME.misc.facsPlot)
(in module PYME.misc.kdFit)

I

ib16() (in module PYME.misc.TiffImagePlugin)
ib32() (in module PYME.misc.TiffImagePlugin)
iGen() (in module PYME.DSView.modules.blobMeasure)
il16() (in module PYME.misc.TiffImagePlugin)
il32() (in module PYME.misc.TiffImagePlugin)
ImageBounds (class in PYME.IO.image)
(class in PYME.LMVis.visHelpersMin)
ImageCumulativeHistogram (class in PYME.recipes.measurement)
imageDensityAtDistance() (in module PYME.Analysis.Colocalisation.edtColoc)
ImageFileDirectory (class in PYME.misc.TiffImagePlugin)
ImageFrameSource (class in PYME.IO.clusterExport)
ImageHistogram (class in PYME.recipes.measurement)
ImageList (class in PYME.DSView.modules.composite)
ImagePanel (class in PYME.DSView.scrolledImagePanel)
ImagePyramid (class in PYME.Analysis.deTile)
images() (PYME.DSView.modules.blobMeasure.Measurements method)
ImageSource (class in PYME.LMVis.Extras.pointSetGeneration)
ImageStack (class in PYME.IO.image)
ImageViewPanel (class in PYME.LMVis.imageView)
imgBounds (PYME.IO.image.ImageStack attribute)
impfilt() (in module PYME.Analysis.implicitFilter)
impfilt2() (in module PYME.Analysis.implicitFilter)
impfilt3() (in module PYME.Analysis.implicitFilter)
ImportMatDialog (class in PYME.LMVis.importTextDialog)
ImportTextDialog (class in PYME.LMVis.importTextDialog)
imread() (in module PYME.contrib.gohlke.czifile)
(in module PYME.contrib.gohlke.tifffile)
imsave() (in module PYME.contrib.gohlke.tifffile)
imshow() (in module PYME.contrib.gohlke.tifffile)
index (PYME.IO.tabular.colourFilter attribute)
index() (PYME.DSView.modules.blobMeasure.Measurements method)
(PYME.DSView.modules.particleTracking.ParticleTrackingView method)
index_coeffs() (in module PYME.misc.read_agf)
index_data() (in module PYME.misc.read_agf)
info() (PYME.ParallelTasks.distributor.TaskQueue method)
Init() (PYME.Acquire.protocol.Protocol method)
(PYME.Acquire.protocol.TaskListProtocol method)
(PYME.Acquire.protocol.ZStackTaskListProtocol method)
init_cluster() (PYME.Deconv.tq_block_dec.blocking_deconv method)
init_gui() (in module PYME.Acquire.ExecTools)
init_hardware() (in module PYME.Acquire.ExecTools)
init_psf() (PYME.Deconv.tq_block_dec.blocking_deconv method)
init_renderers() (in module PYME.LMVis.renderers)
InitBG() (in module PYME.Acquire.ExecTools)
InitGUI() (in module PYME.Acquire.ExecTools)
initialize() (PYME.Acquire.microscope.microscope method)
initializeWorkerTimeout() (PYME.ParallelTasks.taskDef.Task method)
InitPlugins() (in module PYME.LMVis.Extras)
inputs (PYME.recipes.base.ModuleBase attribute)
(PYME.recipes.base.ModuleCollection attribute)
insert() (PYME.Analysis.points.QuadTree.pointQT.qtBranchNode method)
(PYME.Analysis.points.QuadTree.pointQT.qtLeafNode method)
(PYME.Analysis.points.QuadTree.pointQT.qtNode method)
(PYME.Analysis.points.QuadTree.pointQT.qtRoot method)
(PYME.Analysis.points.QuadTree.pointQTF.qtBranchNode method)
(PYME.Analysis.points.QuadTree.pointQTF.qtLeafNode method)
(PYME.Analysis.points.QuadTree.pointQTF.qtNode method)
(PYME.Analysis.points.QuadTree.pointQTF.qtRoot method)
insert_dispersion_coeffs() (in module PYME.misc.read_agf)
insertRecords() (PYME.Analysis.points.QuadTree.pointQTF.qtBranchNode method)
(PYME.Analysis.points.QuadTree.pointQTF.qtLeafNode method)
InstallSpy() (in module PYME.misc.eventSpy)
InstanceEditor() (in module PYME.misc.mock_traitsui)
instanceinlist() (in module PYME.IO.MetaDataHandler)
IntegrationSliders (class in PYME.Acquire.ui.intsliders)
IntegrationSliders_ (class in PYME.Acquire.ui.intsliders)
IntensityAtPoints (class in PYME.recipes.measurement)
interp() (PYME.localization.FitFactories.Interpolators.CSInterpolator.CSInterpolator method)
(PYME.localization.FitFactories.Interpolators.CubeSInterpolatorP.CSInterpolator method)
(PYME.localization.FitFactories.Interpolators.CubicSplineInterpolator.CubicSplineInterpolator method)
(PYME.localization.FitFactories.Interpolators.LinearInterpolator.LinearInterpolator method)
(PYME.localization.FitFactories.Interpolators.LinearPInterpolatorP.LinearInterpolator method)
InterpFitFactory (class in PYME.localization.FitFactories.SplitterFitInterpBNR)
(class in PYME.localization.FitFactories.SplitterFitInterpNR)
interpG() (PYME.localization.FitFactories.Interpolators.CSInterpolator.CSInterpolator method)
(PYME.localization.FitFactories.Interpolators.LinearInterpolator.LinearInterpolator method)
intfrombits() (in module PYME.contrib.lzw)
IntParam (class in PYME.localization.MetaDataEdit)
inttobits() (in module PYME.contrib.lzw)
invalidate_data() (PYME.recipes.base.ModuleCollection method)
Invert (class in PYME.recipes.base)
ioLoop() (PYME.ParallelTasks.taskWorkerHTTP.taskWorker method)
IQR() (in module PYME.localization.Test.fitTestJigSCMOS)
(in module PYME.localization.Test.fitTestJigWC)
is_bigtiff (PYME.contrib.gohlke.tifffile.TIFFfile attribute)
is_fluoview (PYME.contrib.gohlke.tifffile.TIFFfile attribute)
is_leader() (PYME.IO.clusterDuplication.DupManager method)
is_lsm (PYME.contrib.gohlke.tifffile.TIFFfile attribute)
is_nih (PYME.contrib.gohlke.tifffile.TIFFfile attribute)
is_ome (PYME.contrib.gohlke.tifffile.TIFFfile attribute)
is_palette (PYME.contrib.gohlke.tifffile.TIFFfile attribute)
is_rgb (PYME.contrib.gohlke.tifffile.TIFFfile attribute)
is_splitter_fit (PYME.localization.remFitBuf.fitTask attribute)
is_stk (PYME.contrib.gohlke.tifffile.TIFFfile attribute)
isAlive() (PYME.Deconv.tq_block_dec.blocking_deconv method)
(PYME.ParallelTasks.taskServerZC.TaskQueueSet method)
IsChecked() (PYME.contrib.listctrlMixins.CheckListCtrlMixin method)
isComplete() (PYME.IO.DataSources.ClusterPZFDataSource.DataSource method)
isdir() (in module PYME.IO.clusterIO)
IsEmptyCell() (PYME.LMVis.pipelineView.PipelineTable method)
(PYME.ui.recArrayView.RecArrayTable method)
isLocal() (in module PYME.IO.clusterIO)
IsMouseWellOutsideWindow() (PYME.contrib.auiFloatBook.AuiNotebookWithFloatingPages method)
isnumber() (in module PYME.LMVis.importTextDialog)
isodata() (in module PYME.Analysis.thresholding)
isodata_f() (in module PYME.Analysis.thresholding)
isosurface3D() (PYME.DSView.modules.blobMeasure.Measurements method)
isRunning() (PYME.Acquire.frameWrangler.FrameWrangler method)
Item() (in module PYME.misc.mock_traitsui)
items() (PYME.misc.TiffImagePlugin.ImageFileDirectory method)

J

join() (PYME.Acquire.ExecTools.BGInitTask method)
joinBGInit() (in module PYME.Acquire.ExecTools)
JoinChannels (class in PYME.recipes.base)
JSONAPIRequestHandler (class in PYME.ParallelTasks.webframework)
jumpDistModel() (in module PYME.Analysis.Tracking.trackUtils)
jumpDistProb() (in module PYME.Analysis.Tracking.trackUtils)

K

k (PYME.Deconv.deccs.dec_gauss attribute)
(PYME.Deconv.deccs2.dec_gauss attribute)
(PYME.Deconv.deccs_mc.dec_gauss attribute)
keep_alive() (in module PYME.IO.clusterDuplication)
keys() (PYME.Acquire.microscope.StateManager method)
(PYME.Analysis.Tracking.trackUtils.Clump method)
(PYME.IO.MetaDataHandler.MDHandlerBase method)
(PYME.IO.tabular.cachingResultsFilter method)
(PYME.IO.tabular.cloneSource method)
(PYME.IO.tabular.colourFilter method)
(PYME.IO.tabular.concatenateFilter method)
(PYME.IO.tabular.fitResultsSource method)
(PYME.IO.tabular.h5rSource method)
(PYME.IO.tabular.hdfSource method)
(PYME.IO.tabular.mappingFilter method)
(PYME.IO.tabular.matfileSource method)
(PYME.IO.tabular.randomSource method)
(PYME.IO.tabular.recArrayInput method)
(PYME.IO.tabular.resultsFilter method)
(PYME.IO.tabular.textfileSource method)
(PYME.LMVis.pipeline.Pipeline method)
(PYME.LMVis.workspaceTree.WorkWrap method)
(PYME.misc.TiffImagePlugin.ImageFileDirectory method)
kill() (PYME.Deconv.decThread.decThread method)
(PYME.Deconv.tq_block_dec.blocking_deconv method)
(PYME.ParallelTasks.taskServerZC.TaskQueueSet method)
kwargs() (PYME.recipes.skfilters.SKFilter method)

L

Label (class in PYME.recipes.processing)
labeled() (in module PYME.DSView.displayOptions)
(in module PYME.misc.extraCMaps)
LabelPanel (class in PYME.DSView.modules.svmLabel)
laplace() (in module PYME.Analysis.multicolourMeta)
(in module PYME.Analysis.points.DeClump.deClumpGUI)
(in module PYME.Analysis.points.EdgeDB.edgeTest)
(in module PYME.Analysis.points.QuadTree)
(in module PYME.Analysis.points.QuadTree.QTrend)
(in module PYME.Analysis.points.QuadTree.rendQT)
(in module PYME.Analysis.points.twoColourPlot)
(in module PYME.Deconv.deccs_mc)
(in module PYME.localization.FitFactories.SplitterObjFindR)
(in module PYME.localization.FitFactories.SplitterShiftEstFR)
(in module PYME.localization.Test.fitTestJig)
(in module PYME.localization.Test.fitTestJigWC)
(in module PYME.localization.twist)
(in module PYME.misc.aniso)
(in module PYME.misc.facsPlot)
(in module PYME.misc.kdFit)
LaserSliders (class in PYME.Acquire.ui.lasersliders)
LaserSliders_ (class in PYME.Acquire.ui.lasersliders)
LaserToggles (class in PYME.Acquire.ui.lasersliders)
launch_browser() (in module PYME.util.fProfile.viewProfile)
launch_localize() (in module PYME.ParallelTasks.HTTPTaskPusher)
LaunchAnalysis() (PYME.Acquire.SpoolController.SpoolController method)
layer_datasources (PYME.LMVis.pipeline.Pipeline attribute)
layout() (in module PYME.recipes.recipeLayout)
layout_vertical() (in module PYME.recipes.recipeLayout)
Lfunc() (PYME.Analysis.PSFEst.dec.dec_psf method)
(PYME.Deconv.dec.dec_4pi method)
(PYME.Deconv.dec.dec_4pi_c method)
(PYME.Deconv.dec.dec_bead method)
(PYME.Deconv.dec.dec_conv method)
(PYME.Deconv.deccs.dec_bead method)
(PYME.Deconv.deccs.dec_conv method)
(PYME.Deconv.deccs.dec_gauss method)
(PYME.Deconv.deccs2.dec_bead method)
(PYME.Deconv.deccs2.dec_conv method)
(PYME.Deconv.deccs2.dec_gauss method)
(PYME.Deconv.deccs2.dec_sparse method)
(PYME.Deconv.deccs_mc.dec_bead method)
(PYME.Deconv.deccs_mc.dec_conv method)
(PYME.Deconv.deccs_mc.dec_gauss method)
(PYME.Deconv.richardsonLucy.dec_conv method)
(PYME.Deconv.richardsonLucy.dec_conv_slow method)
(PYME.Deconv.richardsonLucyMV.dec_conv method)
(PYME.Deconv.richardsonLucyMV.dec_conv_slow method)
(PYME.Deconv.richardsonLucyMVM.dec_conv method)
(PYME.Deconv.richardsonLucyMVM.dec_conv_slow method)
Lhfunc() (PYME.Analysis.PSFEst.dec.dec_psf method)
(PYME.Deconv.dec.dec_4pi method)
(PYME.Deconv.dec.dec_4pi_c method)
(PYME.Deconv.dec.dec_bead method)
(PYME.Deconv.dec.dec_conv method)
(PYME.Deconv.deccs.dec_bead method)
(PYME.Deconv.deccs.dec_conv method)
(PYME.Deconv.deccs.dec_gauss method)
(PYME.Deconv.deccs2.dec_bead method)
(PYME.Deconv.deccs2.dec_conv method)
(PYME.Deconv.deccs2.dec_gauss method)
(PYME.Deconv.deccs2.dec_sparse method)
(PYME.Deconv.deccs_mc.dec_bead method)
(PYME.Deconv.deccs_mc.dec_conv method)
(PYME.Deconv.deccs_mc.dec_gauss method)
(PYME.Deconv.richardsonLucy.dec_conv method)
(PYME.Deconv.richardsonLucy.dec_conv_slow method)
(PYME.Deconv.richardsonLucyMV.dec_conv method)
(PYME.Deconv.richardsonLucyMV.dec_conv_slow method)
(PYME.Deconv.richardsonLucyMVM.dec_conv method)
(PYME.Deconv.richardsonLucyMVM.dec_conv_slow method)
LHoodRenderer (class in PYME.LMVis.renderers)
LimitedSizeDict (class in PYME.Acquire.sampleInformation)
lin2Model (class in PYME.Analysis.points.twoColour)
lin3Model (class in PYME.Analysis.points.twoColour)
lin3zModel (class in PYME.Analysis.points.twoColour)
LinearInterpolator (class in PYME.localization.FitFactories.Interpolators.LinearInterpolator)
(class in PYME.localization.FitFactories.Interpolators.LinearPInterpolatorP)
linMod() (in module PYME.Analysis.BleachProfile.rawIntensity)
linModel (class in PYME.Analysis.points.twoColour)
list() (PYME.misc.pyme_zeroconf.ZCListener method)
(PYME.misc.pyme_zeroconf.ZeroConfNS method)
list_directory() (PYME.ParallelTasks.dataserver_wsgi.dataserver method)
(PYME.ParallelTasks.HTTPDataServer.PYMEHTTPRequestHandler method)
ListCtrlAutoWidthMixin (class in PYME.contrib.listctrlMixins)
ListCtrlSelectionManagerMix (class in PYME.contrib.listctrlMixins)
listdir() (in module PYME.IO.clusterIO)
listdirectory() (in module PYME.IO.clusterIO)
ListRowHighlighter (class in PYME.contrib.listctrlMixins)
ListWrap (class in PYME.IO.dataWrap)
LMAnalyser2 (class in PYME.DSView.modules.LMAnalysis)
lNdfcn() (in module PYME.Analysis.BleachProfile.intensProf)
lNdfcnDE() (in module PYME.Analysis.BleachProfile.intensProf)
lNofcn() (in module PYME.Analysis.BleachProfile.intensProf)
lNofcnDE() (in module PYME.Analysis.BleachProfile.intensProf)
load() (in module PYME.IO.FileUtils.SPAD)
Load() (PYME.IO.image.ImageStack method)
load() (PYME.misc.TiffImagePlugin.ImageFileDirectory method)
load_byte() (PYME.misc.TiffImagePlugin.ImageFileDirectory method)
load_dispatch (PYME.misc.TiffImagePlugin.ImageFileDirectory attribute)
load_double() (PYME.misc.TiffImagePlugin.ImageFileDirectory method)
load_float() (PYME.misc.TiffImagePlugin.ImageFileDirectory method)
load_long() (PYME.misc.TiffImagePlugin.ImageFileDirectory method)
load_rational() (PYME.misc.TiffImagePlugin.ImageFileDirectory method)
load_short() (PYME.misc.TiffImagePlugin.ImageFileDirectory method)
load_string() (PYME.misc.TiffImagePlugin.ImageFileDirectory method)
load_undefined() (PYME.misc.TiffImagePlugin.ImageFileDirectory method)
load_wisdom() (in module PYME.Deconv.fftwWisdom)
loadDark() (in module PYME.IO.FileUtils.SPAD)
LoadData() (PYME.DSView.dsviewer.MyApp method)
loadFile() (PYME.Analysis.svmSegment.svmClassifier method)
loadInput() (PYME.recipes.base.ModuleCollection method)
loadMode() (in module PYME.DSView.modules)
loadModule() (in module PYME.DSView.modules)
LoadModule() (PYME.DSView.dsviewer.DSViewFrame method)
LoadPerspective() (PYME.Acquire.acquiremainframe.PYMEMainFrame method)
loadRaw() (in module PYME.IO.FileUtils.SPAD)
LoadRecipe() (PYME.recipes.recipeGui.RecipeManager method)
LoadRecipeText() (PYME.recipes.recipeGui.RecipeManager method)
loads() (in module PYME.IO.PZFFormat)
LoadSpeckles (class in PYME.recipes.tracking)
loc_test() (in module PYME.Analysis.PSFEst.psfQuality)
local_or_temp_filename() (in module PYME.IO.unifiedIO)
LocalMaxima (class in PYME.recipes.processing)
locate() (in module PYME.misc.locate)
locateFile() (in module PYME.IO.clusterIO)
log_error() (PYME.ParallelTasks.HTTPDataServer.PYMEHTTPRequestHandler method)
log_message() (PYME.ParallelTasks.HTTPDataServer.PYMEHTTPRequestHandler method)
log_request() (PYME.ParallelTasks.HTTPDataServer.PYMEHTTPRequestHandler method)
(PYME.ParallelTasks.webframework.JSONAPIRequestHandler method)
log_stream() (in module PYME.ParallelTasks.PYMEDistributor)
(in module PYME.ParallelTasks.PYMENodeServer)
logEvent() (in module PYME.Acquire.eventLog)
(PYME.Acquire.HDFSpooler.EventLogger method)
(PYME.Acquire.HTTPHDFSpooler.EventLogger method)
(PYME.Acquire.HTTPSpooler.EventLogger method)
(PYME.Acquire.QueueSpooler.EventLogger method)
(PYME.Acquire.Spooler.EventLogger method)
logistic() (in module PYME.Analysis.multicolourMeta)
(in module PYME.Analysis.points.DeClump.deClumpGUI)
(in module PYME.Analysis.points.EdgeDB.edgeTest)
(in module PYME.Analysis.points.QuadTree)
(in module PYME.Analysis.points.QuadTree.QTrend)
(in module PYME.Analysis.points.QuadTree.rendQT)
(in module PYME.Analysis.points.twoColourPlot)
(in module PYME.Deconv.deccs_mc)
(in module PYME.localization.FitFactories.SplitterObjFindR)
(in module PYME.localization.FitFactories.SplitterShiftEstFR)
(in module PYME.localization.Test.fitTestJig)
(in module PYME.localization.Test.fitTestJigWC)
(in module PYME.localization.twist)
(in module PYME.misc.aniso)
(in module PYME.misc.facsPlot)
(in module PYME.misc.kdFit)
lognormal() (in module PYME.Analysis.multicolourMeta)
(in module PYME.Analysis.points.DeClump.deClumpGUI)
(in module PYME.Analysis.points.EdgeDB.edgeTest)
(in module PYME.Analysis.points.QuadTree)
(in module PYME.Analysis.points.QuadTree.QTrend)
(in module PYME.Analysis.points.QuadTree.rendQT)
(in module PYME.Analysis.points.twoColourPlot)
(in module PYME.Deconv.deccs_mc)
(in module PYME.localization.FitFactories.SplitterObjFindR)
(in module PYME.localization.FitFactories.SplitterShiftEstFR)
(in module PYME.localization.Test.fitTestJig)
(in module PYME.localization.Test.fitTestJigWC)
(in module PYME.localization.twist)
(in module PYME.misc.aniso)
(in module PYME.misc.facsPlot)
(in module PYME.misc.kdFit)
logparser (class in PYME.DSView.logparser)
logQueueEvent() (PYME.ParallelTasks.HDFTaskQueue.HDFTaskQueue method)
(PYME.ParallelTasks.taskServerZC.TaskQueueSet method)
logrequests (PYME.ParallelTasks.dataserver_wsgi.dataserver attribute)
(PYME.ParallelTasks.HTTPDataServer.PYMEHTTPRequestHandler attribute)
(PYME.ParallelTasks.webframework.JSONAPIRequestHandler attribute)
logseries() (in module PYME.Analysis.multicolourMeta)
(in module PYME.Analysis.points.DeClump.deClumpGUI)
(in module PYME.Analysis.points.EdgeDB.edgeTest)
(in module PYME.Analysis.points.QuadTree)
(in module PYME.Analysis.points.QuadTree.QTrend)
(in module PYME.Analysis.points.QuadTree.rendQT)
(in module PYME.Analysis.points.twoColourPlot)
(in module PYME.Deconv.deccs_mc)
(in module PYME.localization.FitFactories.SplitterObjFindR)
(in module PYME.localization.FitFactories.SplitterShiftEstFR)
(in module PYME.localization.Test.fitTestJig)
(in module PYME.localization.Test.fitTestJigWC)
(in module PYME.localization.twist)
(in module PYME.misc.aniso)
(in module PYME.misc.facsPlot)
(in module PYME.misc.kdFit)
logwriter (class in PYME.DSView.logparser)
longAxisDistN() (PYME.DSView.modules.blobMeasure.BlobObject method)
longAxisOrthDist() (PYME.DSView.modules.blobMeasure.BlobObject method)
lookup_astig_z() (in module PYME.Analysis.points.astigmatism.astigTools)
loop_forever() (PYME.ParallelTasks.taskWorkerHTTP.taskWorker method)
lp_poisson() (in module PYME.Analysis.cramerRao)
lp_poisson_n() (in module PYME.Analysis.cramerRao)
lw (PYME.Deconv.deccs.dec_conv attribute)
(PYME.Deconv.deccs2.dec_conv attribute)
(PYME.Deconv.deccs2.dec_sparse attribute)
(PYME.Deconv.deccs2.dec_subsamp attribute)
(PYME.Deconv.deccs_mc.dec_conv attribute)

M

mad_0 (PYME.DSView.modules.blobMeasure.DataBlock attribute)
mad_1 (PYME.DSView.modules.blobMeasure.DataBlock attribute)
mad_2 (PYME.DSView.modules.blobMeasure.DataBlock attribute)
main() (in module PYME.Acquire.PYMEAcquire)
(in module PYME.DSView.dsviewer)
(in module PYME.ParallelTasks.HTTPDataServer)
(in module PYME.ParallelTasks.PYMEDistributor)
(in module PYME.ParallelTasks.PYMENodeServer)
(in module PYME.ParallelTasks.dataserver_wsgi)
(in module PYME.ParallelTasks.fitMonP)
(in module PYME.ParallelTasks.launchWorkers)
(in module PYME.ParallelTasks.taskServerZC)
(in module PYME.ParallelTasks.taskWorkerHTTP)
(in module PYME.ParallelTasks.taskWorkerZC)
(in module PYME.recipes.bakeshop)
(in module PYME.recipes.batchProcess)
(in module PYME.recipes.runRecipe)
make_editor() (PYME.contrib.listctrlMixins.TextEditMixin method)
(PYME.ui.MetadataTree.TextEditMixin method)
makeColumnEditable() (PYME.contrib.listctrlMixins.TextEditMixin method)
(PYME.ui.MetadataTree.TextEditMixin method)
makedirs_safe() (in module PYME.ParallelTasks.HTTPDataServer)
makeGraph() (in module PYME.misc.depGraph)
manualLabel (class in PYME.DSView.modules.svmLabel)
manualSegment (class in PYME.DSView.modules.manualSegment)
Mapping (class in PYME.recipes.tablefilters)
mappingFilter (class in PYME.IO.tabular)
MaskEdges (class in PYME.recipes.filters)
match() (PYME.contrib.TextCtrlAutoComplete.test method)
matfileSource (class in PYME.IO.tabular)
max_level_changed() (PYME.ui.histLimits.HistLimitDialog method)
MAXIDX (PYME.Analysis.buffers.bgFrameBuffer attribute)
(PYME.IO.DataSources.BGSDataSource.bgFrameBuffer attribute)
MAXSHORT (PYME.Analysis.buffers.bgFrameBuffer attribute)
(PYME.IO.DataSources.BGSDataSource.bgFrameBuffer attribute)
mdh (PYME.IO.h5rFile.H5RFile attribute)
MDHandlerBase (class in PYME.IO.MetaDataHandler)
MDParam (class in PYME.localization.MetaDataEdit)
MDSource (class in PYME.IO.clusterExport)
MeanFilter (class in PYME.recipes.filters)
MeanNeighbourDistances (class in PYME.recipes.measurement)
measure() (in module PYME.LMVis.objectMeasure)
Measure2D (class in PYME.recipes.measurement)
measureAligned() (in module PYME.LMVis.objectMeasure)
Measurements (class in PYME.DSView.modules.blobMeasure)
measureObjects() (in module PYME.LMVis.objectMeasure)
(PYME.LMVis.pipeline.Pipeline method)
measureObjectsByID() (in module PYME.LMVis.objectMeasure)
MedianFilter (class in PYME.recipes.filters)
memory() (in module PYME.misc.memUsage)
mergeClumps() (in module PYME.Analysis.points.multiview)
mergeEntriesFrom() (PYME.IO.MetaDataHandler.MDHandlerBase method)
metadata (PYME.contrib.gohlke.czifile.CziFile attribute)
(PYME.IO.image.ImageStack attribute)
MetadataPanel (class in PYME.ui.MetadataTree)
microscope (class in PYME.Acquire.microscope)
min_level_changed() (PYME.ui.histLimits.HistLimitDialog method)
mirror (PYME.misc.zemax.DefaultGlass attribute)
mirrorFile() (in module PYME.IO.clusterIO)
mod1pk() (in module PYME.Analysis.BleachProfile.intensProf)
mode (PYME.LMVis.renderers.CurrentRenderer attribute)
(PYME.LMVis.renderers.Gaussian3DRenderer attribute)
(PYME.LMVis.renderers.GaussianRenderer attribute)
(PYME.LMVis.renderers.Histogram3DRenderer attribute)
(PYME.LMVis.renderers.HistogramRenderer attribute)
(PYME.LMVis.renderers.LHoodRenderer attribute)
(PYME.LMVis.renderers.QuadTreeRenderer attribute)
(PYME.LMVis.renderers.Triangle3DRenderer attribute)
(PYME.LMVis.renderers.TriangleRenderer attribute)
(PYME.LMVis.renderers.TriangleRendererW attribute)
module_outputs (PYME.recipes.base.ModuleCollection attribute)
ModuleBase (class in PYME.recipes.base)
ModuleCollection (class in PYME.recipes.base)
moduleName (PYME.IO.DataSources.AlignDataSource.DataSource attribute)
(PYME.IO.DataSources.BGSDataSource.DataSource attribute)
(PYME.IO.DataSources.BioformatsDataSource.DataSource attribute)
(PYME.IO.DataSources.BufferedDataSource.DataSource attribute)
(PYME.IO.DataSources.ClusterPZFDataSource.DataSource attribute)
(PYME.IO.DataSources.DcimgDataSource.DataSource attribute)
(PYME.IO.DataSources.FlatFieldDataSource.DataSource attribute)
(PYME.IO.DataSources.HDFDataSource.DataSource attribute)
(PYME.IO.DataSources.HTTPDataSource.DataSource attribute)
(PYME.IO.DataSources.ImageSeriesDataSource.DataSource attribute)
(PYME.IO.DataSources.MultiviewDataSource.DataSource attribute)
(PYME.IO.DataSources.TQDataSource.DataSource attribute)
(PYME.IO.DataSources.TiffDataSource.DataSource attribute)
(PYME.IO.DataSources.UnsplitDataSource.DataSource attribute)
ModuleSelectionDialog (class in PYME.recipes.recipeGui)
motionFlagger (class in PYME.LMVis.Extras.flagZMotionArtifacts)
mount() (in module PYME.DSView.htmlServe)
MouseEvent() (in module PYME.misc.eventSpy)
movieplot (PYME.Analysis.Tracking.trackUtils.Track attribute)
msd() (in module PYME.Analysis.Tracking.msd)
msdinfo (PYME.Analysis.Tracking.trackUtils.Track attribute)
msdplot (PYME.Analysis.Tracking.trackUtils.Track attribute)
mthresholder (class in PYME.DSView.modules.multithreshold)
MultifitBlobs (class in PYME.recipes.measurement)
multinomial() (in module PYME.Analysis.multicolourMeta)
(in module PYME.Analysis.points.DeClump.deClumpGUI)
(in module PYME.Analysis.points.EdgeDB.edgeTest)
(in module PYME.Analysis.points.QuadTree)
(in module PYME.Analysis.points.QuadTree.QTrend)
(in module PYME.Analysis.points.QuadTree.rendQT)
(in module PYME.Analysis.points.twoColourPlot)
(in module PYME.Deconv.deccs_mc)
(in module PYME.localization.FitFactories.SplitterObjFindR)
(in module PYME.localization.FitFactories.SplitterShiftEstFR)
(in module PYME.localization.Test.fitTestJig)
(in module PYME.localization.Test.fitTestJigWC)
(in module PYME.localization.twist)
(in module PYME.misc.aniso)
(in module PYME.misc.facsPlot)
(in module PYME.misc.kdFit)
Multiply (class in PYME.recipes.base)
multivariate_normal() (in module PYME.Analysis.multicolourMeta)
(in module PYME.Analysis.points.DeClump.deClumpGUI)
(in module PYME.Analysis.points.EdgeDB.edgeTest)
(in module PYME.Analysis.points.QuadTree)
(in module PYME.Analysis.points.QuadTree.QTrend)
(in module PYME.Analysis.points.QuadTree.rendQT)
(in module PYME.Analysis.points.twoColourPlot)
(in module PYME.Deconv.deccs_mc)
(in module PYME.localization.FitFactories.SplitterObjFindR)
(in module PYME.localization.FitFactories.SplitterShiftEstFR)
(in module PYME.localization.Test.fitTestJig)
(in module PYME.localization.Test.fitTestJigWC)
(in module PYME.localization.twist)
(in module PYME.misc.aniso)
(in module PYME.misc.facsPlot)
(in module PYME.misc.kdFit)
multiviewMapper (class in PYME.LMVis.Extras.multiviewMapping)
munge_res() (in module PYME.Analysis.BleachProfile.kinModels)
MyApp (class in PYME.DSView.dsviewer)
mydict (class in PYME.util.mProfile.mProfile)
(class in PYME.util.mProfile.p)
mydictn (class in PYME.util.mProfile.mProfile)
(class in PYME.util.mProfile.p)
MyFrame (class in PYME.misc.tempMonitor)
(class in PYME.ParallelTasks.fitMon)
(class in PYME.ParallelTasks.fitMonP)
myListCtrl (class in PYME.contrib.TextCtrlAutoComplete)
(class in PYME.DSView.modules.svmLabel)
myLock (class in PYME.ParallelTasks.HDFTaskQueue)
MyNavigationToolbar (class in PYME.DSView.modules.graphViewPanel)
(class in PYME.DSView.modules.pupilView)
myTask (class in PYME.ParallelTasks.taskDef)
mytimer (class in PYME.Acquire.mytimer)
MyWeakSet (class in PYME.DSView.displayOptions)

N

n() (PYME.misc.zemax.DefaultGlass method)
(PYME.misc.zemax.Glass method)
name (PYME.LMVis.renderers.CurrentRenderer attribute)
(PYME.LMVis.renderers.Gaussian3DRenderer attribute)
(PYME.LMVis.renderers.GaussianRenderer attribute)
(PYME.LMVis.renderers.Histogram3DRenderer attribute)
(PYME.LMVis.renderers.HistogramRenderer attribute)
(PYME.LMVis.renderers.LHoodRenderer attribute)
(PYME.LMVis.renderers.QuadTreeRenderer attribute)
(PYME.LMVis.renderers.Triangle3DRenderer attribute)
(PYME.LMVis.renderers.TriangleRenderer attribute)
(PYME.LMVis.renderers.TriangleRendererW attribute)
names (PYME.IO.image.ImageStack attribute)
NearestNeighbourDistances (class in PYME.recipes.measurement)
negative_binomial() (in module PYME.Analysis.multicolourMeta)
(in module PYME.Analysis.points.DeClump.deClumpGUI)
(in module PYME.Analysis.points.EdgeDB.edgeTest)
(in module PYME.Analysis.points.QuadTree)
(in module PYME.Analysis.points.QuadTree.QTrend)
(in module PYME.Analysis.points.QuadTree.rendQT)
(in module PYME.Analysis.points.twoColourPlot)
(in module PYME.Deconv.deccs_mc)
(in module PYME.localization.FitFactories.SplitterObjFindR)
(in module PYME.localization.FitFactories.SplitterShiftEstFR)
(in module PYME.localization.Test.fitTestJig)
(in module PYME.localization.Test.fitTestJigWC)
(in module PYME.localization.twist)
(in module PYME.misc.aniso)
(in module PYME.misc.facsPlot)
(in module PYME.misc.kdFit)
NestedClassMDHandler (class in PYME.IO.MetaDataHandler)
newColour() (PYME.LMVis.workspaceTree.WorkWrap method)
next_page() (PYME.contrib.lzw.PagingDecoder method)
niceVariables (PYME.LMVis.importTextDialog.ImportTextDialog attribute)
NodeServer (class in PYME.ParallelTasks.nodeserver)
noise() (in module PYME.Analysis.PSFEst.psfQuality)
noncentral_chisquare() (in module PYME.Analysis.multicolourMeta)
(in module PYME.Analysis.points.DeClump.deClumpGUI)
(in module PYME.Analysis.points.EdgeDB.edgeTest)
(in module PYME.Analysis.points.QuadTree)
(in module PYME.Analysis.points.QuadTree.QTrend)
(in module PYME.Analysis.points.QuadTree.rendQT)
(in module PYME.Analysis.points.twoColourPlot)
(in module PYME.Deconv.deccs_mc)
(in module PYME.localization.FitFactories.SplitterObjFindR)
(in module PYME.localization.FitFactories.SplitterShiftEstFR)
(in module PYME.localization.Test.fitTestJig)
(in module PYME.localization.Test.fitTestJigWC)
(in module PYME.localization.twist)
(in module PYME.misc.aniso)
(in module PYME.misc.facsPlot)
(in module PYME.misc.kdFit)
noncentral_f() (in module PYME.Analysis.multicolourMeta)
(in module PYME.Analysis.points.DeClump.deClumpGUI)
(in module PYME.Analysis.points.EdgeDB.edgeTest)
(in module PYME.Analysis.points.QuadTree)
(in module PYME.Analysis.points.QuadTree.QTrend)
(in module PYME.Analysis.points.QuadTree.rendQT)
(in module PYME.Analysis.points.twoColourPlot)
(in module PYME.Deconv.deccs_mc)
(in module PYME.localization.FitFactories.SplitterObjFindR)
(in module PYME.localization.FitFactories.SplitterShiftEstFR)
(in module PYME.localization.Test.fitTestJig)
(in module PYME.localization.Test.fitTestJigWC)
(in module PYME.localization.twist)
(in module PYME.misc.aniso)
(in module PYME.misc.facsPlot)
(in module PYME.misc.kdFit)
normal() (in module PYME.Analysis.multicolourMeta)
(in module PYME.Analysis.points.DeClump.deClumpGUI)
(in module PYME.Analysis.points.EdgeDB.edgeTest)
(in module PYME.Analysis.points.QuadTree)
(in module PYME.Analysis.points.QuadTree.QTrend)
(in module PYME.Analysis.points.QuadTree.rendQT)
(in module PYME.Analysis.points.twoColourPlot)
(in module PYME.Deconv.deccs_mc)
(in module PYME.localization.FitFactories.SplitterObjFindR)
(in module PYME.localization.FitFactories.SplitterShiftEstFR)
(in module PYME.localization.Test.fitTestJig)
(in module PYME.localization.Test.fitTestJigWC)
(in module PYME.localization.twist)
(in module PYME.misc.aniso)
(in module PYME.misc.facsPlot)
(in module PYME.misc.kdFit)
Normalize (class in PYME.recipes.base)
normalizeFeatures() (in module PYME.Analysis.svmSegment)
NormalizeMean (class in PYME.recipes.base)
NOT_PRESENT (PYME.Acquire.ExecTools.BGInitTask attribute)
Notify() (PYME.Acquire.frameWrangler.FrameWrangler method)
(PYME.Acquire.mytimer.mytimer method)
notify() (PYME.LMVis.filterPane.FilterPanel method)
nTrueDims (PYME.IO.DataSources.BaseDataSource.BaseDataSource attribute)
num_tasks_to_request (PYME.ParallelTasks.nodeserver.NodeServer attribute)
NumpyExporter (class in PYME.IO.dataExporter)
numToAlpha() (in module PYME.IO.FileUtils.nameUtils)

O

ob16() (in module PYME.misc.TiffImagePlugin)
ob32() (in module PYME.misc.TiffImagePlugin)
OBJECT (PYME.Acquire.stackSettings.StackSettings attribute)
ObjectIdentifier (class in PYME.localization.ofind)
(class in PYME.localization.ofind3d)
(class in PYME.localization.ofind_nofilt)
(class in PYME.localization.ofind_pri)
(class in PYME.localization.ofind_split)
(class in PYME.localization.ofind_xcorr)
(class in PYME.localization.ofind_xcorr_fw)
objectIndices() (in module PYME.Analysis.points.EdgeDB.edges)
of() (in module PYME.Analysis.optic_flow)
OfindPoint (class in PYME.localization.ofind)
(class in PYME.localization.ofind3d)
(class in PYME.localization.ofind_nofilt)
(class in PYME.localization.ofind_pri)
(class in PYME.localization.ofind_split)
(class in PYME.localization.ofind_xcorr)
(class in PYME.localization.ofind_xcorr_fw)
ol16() (in module PYME.misc.TiffImagePlugin)
ol32() (in module PYME.misc.TiffImagePlugin)
oldData (PYME.IO.DataSources.BaseDataSource.BaseDataSource attribute)
oldSlice (PYME.IO.DataSources.BaseDataSource.BaseDataSource attribute)
OMETiffExporter (class in PYME.IO.dataExporter)
OMEXMLMDHandler (class in PYME.IO.MetaDataHandler)
On3DIsosurf() (PYME.DSView.modules.vis3D.visualiser method)
On3DVolume() (PYME.DSView.modules.vis3D.visualiser method)
on_SIGHUP() (in module PYME.ParallelTasks.distributor)
(in module PYME.ParallelTasks.taskWorkerHTTP)
OnAddAction() (PYME.Acquire.ui.actionUI.ActionPanel method)
OnAddChan() (PYME.DSView.modules.composite.CompositeDialog method)
OnAddModule() (PYME.recipes.recipeGui.RecipeView method)
OnAddMove() (PYME.Acquire.ui.actionUI.ActionPanel method)
OnAddSequence() (PYME.Acquire.ui.actionUI.ActionPanel method)
OnAddSlide() (PYME.Acquire.sampleInformation.SampleInfoDialog method)
OnAddVSSetting() (PYME.Acquire.ui.voxelSizeDialog.VoxelSizeDialog method)
OnAlignChannels() (PYME.DSView.modules.composite.compositor method)
OnApply() (PYME.DSView.modules.composite.ShiftPanel method)
(PYME.DSView.modules.segmentation.SegmentationPanel method)
OnApplyShiftmap() (PYME.DSView.modules.composite.compositor method)
OnApplyText() (PYME.recipes.recipeGui.RecipeView method)
OnApplyThreshold() (PYME.DSView.modules.filtering.filterer method)
OnAqStart() (PYME.Acquire.zScanner.wavetableZScanner method)
(PYME.Acquire.zScanner.zScanner method)
OnAqStop() (PYME.Acquire.zScanner.wavetableZScanner method)
(PYME.Acquire.zScanner.zScanner method)
OnBake() (PYME.recipes.recipeGui.BatchFrame method)
OnBAnalyse() (PYME.Acquire.ui.HDFSpoolFrame.PanSpool method)
OnBeginEdit() (PYME.ui.MetadataTree.MetadataPanel method)
OnBeginLabelEdit() (PYME.DSView.modules.svmLabel.myListCtrl method)
OnBEndHereButton() (PYME.Acquire.ui.seqdialog.seqPanel method)
OnBLive() (PYME.Acquire.ui.seqdialog.seqPanel method)
OnBMid_numRadiobutton() (PYME.Acquire.ui.seqdialog.seqPanel method)
OnBOptimise() (PYME.DSView.displaySettingsPanel.dispSettingsPanel method)
(PYME.DSView.displaySettingsPanel.dispSettingsPanel2 method)
OnBRemove() (PYME.ParallelTasks.fitMonP.MyFrame method)
OnBSetAqProtocolButton() (PYME.Acquire.ui.HDFSpoolFrame.PanSpool method)
OnBSetSpoolDirButton() (PYME.Acquire.ui.HDFSpoolFrame.PanSpool method)
OnBSingle() (PYME.Acquire.ui.seqdialog.seqPanel method)
OnBSt_endRadiobutton() (PYME.Acquire.ui.seqdialog.seqPanel method)
OnBStartHereButton() (PYME.Acquire.ui.seqdialog.seqPanel method)
OnBStartSpoolButton() (PYME.Acquire.ui.HDFSpoolFrame.PanSpool method)
OnBStartStackButton() (PYME.Acquire.ui.HDFSpoolFrame.PanSpool method)
OnBStopSpoolingButton() (PYME.Acquire.ui.HDFSpoolFrame.PanSpool method)
onBtChangeChoice() (PYME.contrib.TextCtrlAutoComplete.test method)
onBtDynamicChoices() (PYME.contrib.TextCtrlAutoComplete.test method)
onBtMultiChoice() (PYME.contrib.TextCtrlAutoComplete.test method)
onBtStartChoices() (PYME.contrib.TextCtrlAutoComplete.test method)
OnCalcDecays() (PYME.LMVis.Extras.photophysics.DecayAnalyser method)
OnCalcMSDs() (PYME.LMVis.Extras.particleTracking.ParticleTracker method)
OnCalcShift() (PYME.DSView.modules.psfExtraction.psfExtractor method)
OnCalcShiftmap() (PYME.DSView.modules.blobFinding.blobFinder method)
OnCalculate() (PYME.DSView.modules.blobMeasure.Measurements method)
(PYME.DSView.modules.deconvolution.WienerDeconvolver method)
OnCalibrateMultiview() (PYME.DSView.modules.psfExtraction.psfExtractor method)
OnCalibrateShifts() (PYME.LMVis.Extras.multiviewMapping.multiviewMapper method)
OnCalibrateSplitter() (PYME.DSView.modules.LMAnalysis.FitDefaults method)
OnCameraFrame() (PYME.Acquire.zScanner.zScanner method)
OnCancel() (PYME.Deconv.deconvDialogs.DeconvProgressDialog method)
(PYME.Deconv.deconvDialogs.DeconvProgressPanel method)
OnCbOn() (PYME.Acquire.ui.lasersliders.LaserToggles method)
OnCCamera() (PYME.Acquire.ui.selectCameraPanel.CameraChooserPanel method)
OnChanDown() (PYME.DSView.modules.composite.CompositeDialog method)
OnChange() (PYME.DSView.displayOptions.DisplayOpts method)
OnChange3D() (PYME.LMVis.displayPane.DisplayPane method)
(PYME.LMVis.displayPane.DisplayPaneLight method)
OnChangeLineWidth() (PYME.DSView.modules.svmLabel.LabelPanel method)
OnChangeMethod() (PYME.DSView.modules.blobFinding.blobFinder method)
OnChangePDye() (PYME.LMVis.colourPanel.colourPanel method)
OnChangePointColour() (PYME.LMVis.pointSettingsPanel.PointSettingsPanel method)
OnChangePOther() (PYME.LMVis.colourPanel.colourPanel method)
OnChangeScaleBar() (PYME.LMVis.displayPane.DisplayPane method)
(PYME.LMVis.displayPane.DisplayPaneLight method)
OnChangeStructure() (PYME.DSView.modules.svmLabel.LabelPanel method)
OnChanUp() (PYME.DSView.modules.composite.CompositeDialog method)
OnChar() (PYME.contrib.listctrlMixins.TextEditMixin method)
(PYME.ui.MetadataTree.TextEditMixin method)
OnCheckAstigCalibration() (PYME.LMVis.Extras.multiviewMapping.multiviewMapper method)
OnCheckItem() (PYME.contrib.listctrlMixins.CheckListCtrlMixin method)
(PYME.DSView.modules.particleTracking.TrackList method)
OnCheckSpacing() (PYME.Acquire.Utils.sarcSpacing.SarcomereChecker method)
OnChooseVS() (PYME.Acquire.ui.voxelSizeDialog.VoxelSizeDialog method)
OnChPiezoChoice() (PYME.Acquire.ui.seqdialog.seqPanel method)
OnClear() (PYME.Acquire.positionTracker.TrackerPanel method)
OnClearTags() (PYME.DSView.modules.psfExtraction.psfExtractor method)
onClickToggleDown() (PYME.contrib.TextCtrlAutoComplete.TextCtrlAutoComplete method)
onClickToggleUp() (PYME.contrib.TextCtrlAutoComplete.TextCtrlAutoComplete method)
OnCLimChange() (PYME.LMVis.displayPane.DisplayPane method)
OnCLimChanged() (PYME.DSView.DisplayOptionsPanel.OptionsPanel method)
OnCLimHistChange() (PYME.LMVis.displayPane.DisplayPane method)
onCloseFloatingPage() (PYME.contrib.auiFloatBook.AuiNotebookWithFloatingPages method)
OnCloseWindow() (PYME.Acquire.acquiremainframe.PYMEMainFrame method)
(PYME.DSView.dsviewer.DSViewFrame method)
OnCMapChange() (PYME.LMVis.displayPane.DisplayPane method)
OnCMapChanged() (PYME.DSView.DisplayOptionsPanel.OptionsPanel method)
OnCoalesce() (PYME.LMVis.Extras.particleTracking.ParticleTracker method)
OnColNameChange() (PYME.LMVis.importTextDialog.ImportTextDialog method)
OnColoc() (PYME.DSView.modules.coloc.colocaliser method)
(PYME.DSView.modules.fourierRingCorrelation.RingCorrelator method)
OnColocBasic() (PYME.DSView.modules.coloc.colocaliser method)
OnColourFilterChange() (PYME.LMVis.colourFilterGUI.ColourFilterPane method)
onCombobox() (PYME.Acquire.ui.intsliders.IntegrationSliders method)
(PYME.Acquire.ui.intsliders.IntegrationSliders_ method)
OnComplexChanged() (PYME.DSView.DisplayOptionsPanel.OptionsPanel method)
OnConfigure() (PYME.LMVis.Extras.pointSetGeneration.Generator method)
onControlChanged() (PYME.contrib.TextCtrlAutoComplete.TextCtrlAutoComplete method)
OnCorrectFolded() (PYME.LMVis.Extras.multiviewMapping.multiviewMapper method)
OnCorrelate() (PYME.DSView.modules.composite.ShiftPanel method)
OnCreateMask() (PYME.DSView.modules.manualSegment.manualSegment method)
(PYME.DSView.modules.svmLabel.manualLabel method)
OnCrop() (PYME.DSView.dsviewer.DSViewFrame method)
(PYME.DSView.modules.cropping.cropper method)
OnDeconEnd() (PYME.DSView.modules.deconvolution.deconvolver method)
OnDeconTimer() (PYME.DSView.modules.deconvolution.deconvolver method)
(PYME.DSView.modules.deconvolution.WienerDeconvolver method)
OnDeconvBead() (PYME.DSView.modules.deconvolution.deconvolver method)
OnDeconvICTM() (PYME.DSView.modules.deconvolution.deconvolver method)
OnDeconvMovie() (PYME.DSView.modules.deconvolution.deconvolver method)
OnDeconvWiener() (PYME.DSView.modules.deconvolution.deconvolver method)
OnDiagSplit() (PYME.DSView.modules.cropping.cropper method)
OnDNAPaint() (PYME.DSView.modules.LMAnalysis.FitDefaults method)
OnDoChange() (PYME.DSView.DisplayOptionsPanel.OptionsPanel method)
OnDone() (PYME.DSView.modules.segmentation.SegmentationPanel method)
onDragMotion() (PYME.contrib.auiFloatBook.AuiNotebookWithFloatingPages method)
OnDropFiles() (PYME.DSView.dsviewer.dt method)
(PYME.recipes.recipeGui.dt method)
onEndDrag() (PYME.contrib.auiFloatBook.AuiNotebookWithFloatingPages method)
OnEndEdit() (PYME.ui.MetadataTree.MetadataPanel method)
onEnteredText() (PYME.contrib.TextCtrlAutoComplete.TextCtrlAutoComplete method)
OnEraseBackground() (PYME.ui.autoFoldPanel.SizeReportCtrl method)
ones() (in module PYME.util.shmarray.shmarray)
OnExport() (PYME.DSView.dsviewer.DSViewFrame method)
(PYME.DSView.modules.visgui.visGuiExtras method)
OnExportXls() (PYME.DSView.modules.blobMeasure.Measurements method)
onExpReady() (PYME.Acquire.frameWrangler.FrameWrangler method)
OnExtract() (PYME.DSView.modules.prebleachExtraction.PrebleachExtractor method)
OnExtractMultiviewPSF() (PYME.DSView.modules.psfExtraction.psfExtractor method)
OnExtractPSF() (PYME.DSView.modules.psfExtraction.psfExtractor method)
OnExtractSplitPSF() (PYME.DSView.modules.psfExtraction.psfExtractor method)
OnFeaturesChanged() (PYME.recipes.tracking.TrackFeatures method)
OnFileExit() (PYME.Acquire.acquiremainframe.PYMEMainFrame method)
OnFileOpenStack() (PYME.Acquire.acquiremainframe.PYMEMainFrame method)
OnFilterAdd() (PYME.DSView.modules.measure.filterPan.FilterPane method)
(PYME.LMVis.filterPane.FilterPanel method)
OnFilterChange() (PYME.Acquire.sampleInformation.SampleInfoDialog method)
OnFilterClipToSelection() (PYME.DSView.modules.measure.filterPan.FilterPane method)
(PYME.LMVis.filterPane.FilterPane method)
OnFilterDelete() (PYME.DSView.modules.measure.filterPan.FilterPane method)
(PYME.LMVis.filterPane.FilterPanel method)
OnFilterEdit() (PYME.DSView.modules.measure.filterPan.FilterPane method)
(PYME.LMVis.filterPane.FilterPanel method)
OnFilterItemDeselected() (PYME.DSView.modules.measure.filterPan.FilterPane method)
(PYME.LMVis.filterPane.FilterPanel method)
OnFilterItemSelected() (PYME.DSView.modules.measure.filterPan.FilterPane method)
(PYME.LMVis.filterPane.FilterPanel method)
OnFilterListRightClick() (PYME.DSView.modules.measure.filterPan.FilterPane method)
(PYME.LMVis.filterPane.FilterPanel method)
OnFindClumps() (PYME.LMVis.Extras.multiviewMapping.multiviewMapper method)
OnFindObjects() (PYME.DSView.modules.blobFinding.blobFinder method)
OnFinish() (PYME.Acquire.protocol.Protocol method)
(PYME.Acquire.protocol.TaskListProtocol method)
(PYME.Acquire.protocol.ZStackTaskListProtocol method)
OnFitModuleChanged() (PYME.Acquire.ui.AnalysisSettingsUI.AnalysisSettingsPanel method)
(PYME.DSView.modules.LMAnalysis.AnalysisSettingsView method)
OnFitObjects() (PYME.DSView.modules.blobFinding.blobFinder method)
OnFold() (PYME.LMVis.Extras.multiviewMapping.multiviewMapper method)
(PYME.ui.autoFoldPanel.collapsingPane method)
OnFrame() (PYME.Acquire.HDFSpooler.Spooler method)
(PYME.Acquire.HTTPHDFSpooler.Spooler method)
(PYME.Acquire.HTTPSpooler.Spooler method)
(PYME.Acquire.QueueSpooler.Spooler method)
(PYME.Acquire.Spooler.Spooler method)
(PYME.Acquire.protocol.Protocol method)
(PYME.Acquire.protocol.TaskListProtocol method)
(PYME.Acquire.protocol.ZStackTaskListProtocol method)
(PYME.DSView.modules.playback.PlayPanel method)
OnFrameGroup() (PYME.Acquire.autofocus.AutoFocus method)
(PYME.Acquire.Utils.vibrationAnalysis.VibrAnal method)
OnGaussianFilter() (PYME.DSView.modules.filtering.filterer method)
(PYME.DSView.modules.sparkprepare.filterer method)
OnGaussianFit() (PYME.DSView.modules.profileFitting.fitter method)
OnGenEvents() (PYME.LMVis.Extras.pointSetGeneration.Generator method)
OnGenPoints() (PYME.LMVis.Extras.pointSetGeneration.Generator method)
OnGenShiftmap() (PYME.LMVis.Extras.shiftmapGenerator.ShiftmapGenerator method)
OnGenShiftmapQuad() (PYME.LMVis.Extras.shiftmapGenerator.ShiftmapGenerator method)
OnGenShiftmapQuadz() (PYME.LMVis.Extras.shiftmapGenerator.ShiftmapGenerator method)
OnGetChildrenCount() (PYME.LMVis.workspaceTree.WorkspaceTree method)
OnGetIDs() (PYME.LMVis.Extras.objectMeasurements.ParticleTracker method)
OnGetItemAttr() (PYME.DSView.modules.particleTracking.TrackList method)
OnGetItemImage() (PYME.LMVis.workspaceTree.WorkspaceTree method)
OnGetItemText() (PYME.Acquire.sampleInformation.VirtList method)
(PYME.Acquire.ui.actionUI.ActionList method)
(PYME.DSView.modules.composite.ImageList method)
(PYME.DSView.modules.particleTracking.TrackList method)
(PYME.LMVis.workspaceTree.WorkspaceTree method)
OnGetMatches() (PYME.recipes.recipeGui.BatchFrame method)
OnGetMatches2() (PYME.recipes.recipeGui.BatchFrame method)
OnGo() (PYME.DSView.modules.LMAnalysis.LMAnalyser2 method)
OnHideObject() (PYME.DSView.modules.blobMeasure.Measurements method)
OnHideTrack() (PYME.DSView.modules.particleTracking.TrackList method)
OnIDTransient() (PYME.LMVis.Extras.flagZMotionArtifacts.motionFlagger method)
OnImagesPushed() (PYME.DSView.modules.LMAnalysis.LMAnalyser2 method)
OnInit() (PYME.Acquire.PYMEAcquire.BoaApp method)
(PYME.DSView.dsviewer.MyApp method)
(PYME.recipes.bakeshop.BakeshopApp method)
OnIsodataThresh() (PYME.DSView.DisplayOptionsPanel.OptionsPanel method)
OnItemSelected() (PYME.contrib.listctrlMixins.TextEditMixin method)
(PYME.ui.MetadataTree.TextEditMixin method)
OnJoystickEnable() (PYME.Acquire.ui.positionUI.PositionSliders method)
onKeyDown() (PYME.contrib.TextCtrlAutoComplete.TextCtrlAutoComplete method)
OnKeyDown() (PYME.misc.editgrid.EditGrid method)
OnKeyPress() (PYME.DSView.arrayViewPanel.ArrayViewPanel method)
(PYME.DSView.modules.manualSegment.manualSegment method)
(PYME.DSView.modules.svmLabel.manualLabel method)
(PYME.LMVis.imageView.ImageViewPanel method)
(PYME.ui.histLimits.HistLimitPanel method)
OnLabel() (PYME.DSView.modules.filtering.filterer method)
OnLabelActivate() (PYME.DSView.modules.svmLabel.myListCtrl method)
OnLabelSizeThreshold() (PYME.DSView.modules.filtering.filterer method)
OnLabelWatershed() (PYME.DSView.modules.filtering.filterer method)
OnLCSMDoPopup() (PYME.contrib.listctrlMixins.ListCtrlSelectionManagerMix method)
OnLCSMRightDown() (PYME.contrib.listctrlMixins.ListCtrlSelectionManagerMix method)
OnLeftClick() (PYME.ui.autoFoldPanel.CaptionBar method)
OnLeftDown() (PYME.contrib.listctrlMixins.TextEditMixin method)
(PYME.DSView.arrayViewPanel.ArrayViewPanel method)
(PYME.LMVis.imageView.ImageViewPanel method)
(PYME.ui.MetadataTree.TextEditMixin method)
(PYME.ui.histLimits.HistLimitPanel method)
OnLeftUp() (PYME.DSView.arrayViewPanel.ArrayViewPanel method)
(PYME.LMVis.imageView.ImageViewPanel method)
(PYME.ui.histLimits.HistLimitPanel method)
OnLineThickness() (PYME.DSView.DisplayOptionsPanel.OptionsPanel method)
onListClick() (PYME.contrib.TextCtrlAutoComplete.TextCtrlAutoComplete method)
onListColClick() (PYME.contrib.TextCtrlAutoComplete.TextCtrlAutoComplete method)
onListDClick() (PYME.contrib.TextCtrlAutoComplete.TextCtrlAutoComplete method)
onListItemSelected() (PYME.contrib.TextCtrlAutoComplete.TextCtrlAutoComplete method)
OnListRightClick() (PYME.DSView.modules.particleTracking.TrackList method)
OnLoadClassifier() (PYME.DSView.modules.svmLabel.manualLabel method)
OnLoadOutputs() (PYME.DSView.modules.recipes.RecipePlugin method)
OnLoadRecipe() (PYME.recipes.recipeGui.RecipeManager method)
OnLUTDrawCB() (PYME.LMVis.displayPane.DisplayPane method)
(PYME.LMVis.displayPane.DisplayPaneLight method)
OnMakeComposites() (PYME.DSView.modules.composite.compositor method)
OnMappingChange() (PYME.DSView.displaySettingsPanel.dispSettingsPanel method)
(PYME.DSView.displaySettingsPanel.dispSettingsPanel2 method)
OnMapZ() (PYME.LMVis.Extras.multiviewMapping.multiviewMapper method)
OnMAquireOnePic() (PYME.Acquire.acquiremainframe.PYMEMainFrame method)
OnMAquireStack() (PYME.Acquire.acquiremainframe.PYMEMainFrame method)
OnMaxProject() (PYME.DSView.modules.filtering.filterer method)
OnMCamBin() (PYME.Acquire.acquiremainframe.PYMEMainFrame method)
OnMCamRoi() (PYME.Acquire.acquiremainframe.PYMEMainFrame method)
OnMCamSetPixelSize() (PYME.Acquire.acquiremainframe.PYMEMainFrame method)
OnMDChanged() (PYME.Acquire.ui.AnalysisSettingsUI.AnalysisDetailsPanel method)
OnMDisplayClearSel() (PYME.Acquire.acquiremainframe.PYMEMainFrame method)
OnMeanProject() (PYME.DSView.modules.filtering.filterer method)
OnMeasure() (PYME.LMVis.Extras.objectMeasurements.ParticleTracker method)
OnMergeClumps() (PYME.LMVis.Extras.multiviewMapping.multiviewMapper method)
OnMethodChanged() (PYME.Deconv.deconvDialogs.DeconvSettingsDialog method)
OnMiddleDClick() (PYME.DSView.arrayViewPanel.ArrayViewPanel method)
OnMiddleDown() (PYME.DSView.arrayViewPanel.ArrayViewPanel method)
(PYME.LMVis.imageView.ImageViewPanel method)
OnMiddleUp() (PYME.DSView.arrayViewPanel.ArrayViewPanel method)
(PYME.LMVis.imageView.ImageViewPanel method)
OnMotion() (PYME.DSView.arrayViewPanel.ArrayViewPanel method)
(PYME.LMVis.imageView.ImageViewPanel method)
OnMouseEnterLeave() (PYME.ui.autoFoldPanel.CaptionBar method)
OnMouseEnterPane() (PYME.ui.autoFoldPanel.foldPanel method)
OnMouseLeave() (PYME.ui.autoFoldPanel.foldPanel method)
OnMouseLeavePane() (PYME.ui.autoFoldPanel.foldPanel method)
OnMouseMove() (PYME.ui.histLimits.HistLimitPanel method)
OnMouseScrollEvent() (PYME.ui.histLimits.HistLimitPanel method)
OnNewRecipe() (PYME.recipes.recipeGui.RecipeView method)
OnObjApplyThreshold() (PYME.LMVis.triBlobs.BlobSettingsPanel method)
OnObjMeasure() (PYME.LMVis.triBlobs.BlobSettingsPanel method)
OnOpen() (PYME.DSView.dsviewer.DSViewFrame method)
OnOptimise() (PYME.DSView.DisplayOptionsPanel.OptionsPanel method)
OnPaint() (PYME.Acquire.ui.splashScreen.SplashPanel method)
(PYME.DSView.eventLogViewer.eventLogPanel method)
(PYME.DSView.eventLogViewer.eventLogTPanel method)
(PYME.DSView.scrolledImagePanel.ImagePanel method)
(PYME.DSView.splashScreen.SplashPanel method)
(PYME.LMVis.imageView.ImageViewPanel method)
(PYME.ui.autoFoldPanel.CaptionBar method)
(PYME.ui.autoFoldPanel.SizeReportCtrl method)
(PYME.ui.autoFoldPanel.foldButton method)
(PYME.ui.fastGraph.FastGraphPanel method)
(PYME.ui.histLimits.HistLimitPanel method)
OnParamChange() (PYME.recipes.tracking.TrackFeatures method)
OnPaste() (PYME.misc.editgrid.EditGrid method)
OnPauseActions() (PYME.Acquire.ui.actionUI.ActionPanel method)
OnPercentileCLim() (PYME.LMVis.displayPane.DisplayPane method)
OnPerFrame() (PYME.LMVis.Extras.perFrameVariable.PerFrameVar method)
OnPick() (PYME.recipes.recipeGui.RecipeView method)
OnPlay() (PYME.DSView.modules.playback.PlayPanel method)
OnPlayPosChanged() (PYME.DSView.modules.playback.PlayPanel method)
OnPlaySpeedChanged() (PYME.DSView.modules.playback.PlayPanel method)
OnPlotAxialProfile() (PYME.DSView.modules.profilePlotting.profiler method)
OnPlotProfile() (PYME.DSView.modules.multithreshold.mthresholder method)
(PYME.DSView.modules.profilePlotting.profiler method)
(PYME.DSView.modules.squiggleTools.squiggle method)
OnPlotTemperature() (PYME.LMVis.Extras.temperaturePlot.TempPlotter method)
OnPointAlphaChange() (PYME.LMVis.pointSettingsPanel.PointSettingsPanel method)
OnPointSelect() (PYME.DSView.modules.LMAnalysis.LMAnalyser2 method)
OnPointSizeChange() (PYME.LMVis.pointSettingsPanel.PointSettingsPanel method)
OnPRI3D() (PYME.DSView.modules.LMAnalysis.FitDefaults method)
OnPSFFileChanged() (PYME.Deconv.deconvDialogs.DeconvSettingsDialog method)
(PYME.DSView.modules.deconvolution.WienerDeconvolver method)
OnPSFNotebookPageChanged() (PYME.Deconv.deconvDialogs.DeconvSettingsDialog method)
OnPSFROI() (PYME.DSView.modules.psfExtraction.psfExtractor method)
OnQTLeafChange() (PYME.LMVis.quadTreeSettings.QuadTreeSettingsPanel method)
OnRawDecay() (PYME.DSView.modules.profileFitting.fitter method)
OnRawDecaySimp() (PYME.DSView.modules.profileFitting.fitter method)
OnRefrTimer() (PYME.DSView.arrayViewPanel.ArrayViewPanel method)
OnRemoveChan() (PYME.DSView.modules.composite.CompositeDialog method)
OnRetrieveIntensitySteps() (PYME.LMVis.Extras.photophysics.DecayAnalyser method)
OnRightDown() (PYME.DSView.arrayViewPanel.ArrayViewPanel method)
(PYME.ui.MetadataTree.MetadataPanel method)
OnRightUp() (PYME.DSView.arrayViewPanel.ArrayViewPanel method)
(PYME.LMVis.workspaceTree.WorkspaceTree method)
(PYME.ui.MetadataTree.MetadataPanel method)
(PYME.ui.histLimits.HistLimitPanel method)
OnRunCanned() (PYME.DSView.modules.recipes.RecipePlugin method)
OnSave() (PYME.DSView.dsviewer.DSViewFrame method)
OnSaveClassifier() (PYME.DSView.modules.svmLabel.manualLabel method)
OnSaveObjects() (PYME.DSView.modules.blobMeasure.Measurements method)
OnSaveOutputs() (PYME.DSView.modules.recipes.RecipePlugin method)
OnSaveRecipe() (PYME.recipes.recipeGui.RecipeManager method)
OnSaveToCluster() (PYME.DSView.dsviewer.DSViewFrame method)
OnScaleChanged() (PYME.DSView.DisplayOptionsPanel.OptionsPanel method)
(PYME.DSView.displaySettingsPanel.dispSettingsPanel method)
(PYME.DSView.displaySettingsPanel.dispSettingsPanel2 method)
OnScrollX() (PYME.DSView.scrolledImagePanel.ScrolledImagePanel method)
OnScrollY() (PYME.DSView.scrolledImagePanel.ScrolledImagePanel method)
OnSeekStart() (PYME.DSView.modules.playback.PlayPanel method)
OnSegmentAnneal() (PYME.DSView.modules.segmentation.segmenter method)
OnSelect() (PYME.recipes.recipeGui.ModuleSelectionDialog method)
OnSelectCrosshairs() (PYME.DSView.DisplayOptionsPanel.OptionsPanel method)
OnSelectLine() (PYME.DSView.DisplayOptionsPanel.OptionsPanel method)
OnSelectRectangle() (PYME.DSView.DisplayOptionsPanel.OptionsPanel method)
OnSelectSlide() (PYME.Acquire.sampleInformation.SampleInfoDialog method)
OnSelectSquiggle() (PYME.DSView.DisplayOptionsPanel.OptionsPanel method)
OnSelectTrack() (PYME.DSView.modules.particleTracking.ParticleTrackingView method)
OnSetBlobColour() (PYME.LMVis.triBlobs.BlobSettingsPanel method)
OnSetLabels() (PYME.DSView.modules.filtering.filterer method)
OnSetMapsDefault() (PYME.DSView.modules.LMAnalysis.FitDefaults method)
OnSetPosition() (PYME.DSView.arrayViewPanel.ArrayViewPanel method)
OnSetShiftField() (PYME.DSView.modules.splitter.Unmixer method)
OnSetShiftmap() (PYME.DSView.modules.composite.CompositeDialog method)
OnSetSlide() (PYME.Acquire.sampleInformation.slidePanel method)
OnShiftCorr() (PYME.DSView.OverlaysPanel.OverlayPanel method)
OnShow() (PYME.LMVis.colourPanel.colourPanel method)
OnShowAdjPoints() (PYME.DSView.OverlaysPanel.OverlayPanel method)
OnShowChanged() (PYME.DSView.DisplayOptionsPanel.OptionsPanel method)
OnShowPoints() (PYME.DSView.OverlaysPanel.OverlayPanel method)
OnShowThreshold() (PYME.DSView.DisplayOptionsPanel.OptionsPanel method)
OnShowTrack() (PYME.DSView.modules.particleTracking.TrackList method)
OnSignalFracThresh() (PYME.DSView.DisplayOptionsPanel.OptionsPanel method)
OnSingleEnd() (PYME.Acquire.ui.seqdialog.seqPanel method)
OnSize() (PYME.DSView.eventLogViewer.eventLogPanel method)
(PYME.DSView.eventLogViewer.eventLogTPanel method)
(PYME.DSView.modules.playback.PlayPanel method)
(PYME.DSView.scrolledImagePanel.ScrolledImagePanel method)
(PYME.LMVis.imageView.ImageViewPanel method)
(PYME.LMVis.pipelineView.PipelinePanel method)
(PYME.ui.AUIFrame.AUIFrame method)
(PYME.ui.MetadataTree.MetadataPanel method)
(PYME.ui.autoFoldPanel.CaptionBar method)
(PYME.ui.autoFoldPanel.SizeReportCtrl method)
(PYME.ui.fastGraph.FastGraphPanel method)
(PYME.ui.histLimits.HistLimitPanel method)
(PYME.ui.recArrayView.recArrayPanel method)
OnSliceChanged() (PYME.DSView.DisplayOptionsPanel.OptionsPanel method)
onSlide() (PYME.Acquire.ui.intsliders.IntegrationSliders method)
(PYME.Acquire.ui.intsliders.IntegrationSliders_ method)
(PYME.Acquire.ui.lasersliders.LaserSliders method)
(PYME.Acquire.ui.lasersliders.LaserSliders_ method)
(PYME.Acquire.ui.positionUI.PositionSliders method)
OnSortOrderChanged() (PYME.contrib.listctrlMixins.ColumnSorterMixin method)
OnSpecAdd() (PYME.LMVis.colourPanel.colourPanel method)
OnSpecChange() (PYME.LMVis.colourPanel.colourPanel method)
OnSpecDelete() (PYME.LMVis.colourPanel.colourPanel method)
OnSpecGuess() (PYME.LMVis.colourPanel.colourPanel method)
OnSpecListRightClick() (PYME.LMVis.colourPanel.colourPanel method)
OnSplitChannels() (PYME.DSView.modules.composite.compositor method)
OnSplitter2D() (PYME.DSView.modules.LMAnalysis.FitDefaults method)
OnSplitter3D() (PYME.DSView.modules.LMAnalysis.FitDefaults method)
OnSpoolingStarted() (PYME.Acquire.ui.HDFSpoolFrame.PanSpool method)
OnSpoolingStopped() (PYME.Acquire.ui.HDFSpoolFrame.PanSpool method)
OnSpoolMethodChanged() (PYME.Acquire.ui.HDFSpoolFrame.PanSpool method)
OnStandard2D() (PYME.DSView.modules.LMAnalysis.FitDefaults method)
OnStandard3D() (PYME.DSView.modules.LMAnalysis.FitDefaults method)
OnSVMSegment() (PYME.DSView.modules.svmLabel.manualLabel method)
OnSVMTrain() (PYME.DSView.modules.svmLabel.manualLabel method)
OnSynchronise() (PYME.DSView.modules.synchronise.syncer method)
OnTagEdge() (PYME.Acquire.positionTracker.TrackerPanel method)
OnTagPoints() (PYME.DSView.modules.psfExtraction.psfExtractor method)
OnTagPSF() (PYME.DSView.modules.psfExtraction.psfExtractor method)
onTarget() (PYME.Acquire.Utils.pointScanner.PointScanner method)
(PYME.Acquire.Utils.pointScanner.PointScanner3D method)
OnTcSpoolFileText() (PYME.Acquire.ui.HDFSpoolFrame.PanSpool method)
OnTEndPosKillFocus() (PYME.Acquire.ui.seqdialog.seqPanel method)
OnTest() (PYME.DSView.modules.LMAnalysis.LMAnalyser2 method)
OnTestFrame() (PYME.DSView.modules.LMAnalysis.LMAnalyser2 method)
OnTick() (PYME.Acquire.Utils.fastTiler.fastTiler method)
OnTile() (PYME.DSView.modules.tiling.tiler method)
OnTilePyramid() (PYME.DSView.modules.tiling.tiler method)
onTimer() (PYME.misc.tempMonitor.MyFrame method)
(PYME.ParallelTasks.fitMon.MyFrame method)
(PYME.ParallelTasks.fitMonP.MyFrame method)
OnTNumSlicesKillFocus() (PYME.Acquire.ui.seqdialog.seqPanel method)
OnToggleBackground() (PYME.DSView.modules.LMAnalysis.LMAnalyser2 method)
OnToggleModule() (PYME.DSView.dsviewer.DSViewFrame method)
OnTrack() (PYME.DSView.modules.particleTracking.ParticleTrackingView method)
OnTrackMolecules() (PYME.LMVis.Extras.particleTracking.ParticleTracker method)
OnTStepSizeKillFocus() (PYME.Acquire.ui.seqdialog.seqPanel method)
OnTStPosKillFocus() (PYME.Acquire.ui.seqdialog.seqPanel method)
OnUnmix() (PYME.DSView.modules.splitter.Unmixer method)
(PYME.DSView.modules.unmixing.Unmixer method)
OnUnmixMax() (PYME.DSView.modules.splitter.Unmixer method)
OnView() (PYME.DSView.modules.blobMeasure.Measurements method)
OnViewBackground() (PYME.DSView.modules.visgui.visGuiExtras method)
OnViewSelect() (PYME.DSView.modules.particleTracking.ParticleTrackingView method)
OnWheel() (PYME.DSView.arrayViewPanel.ArrayViewPanel method)
(PYME.DSView.eventLogViewer.eventLogPanel method)
(PYME.DSView.eventLogViewer.eventLogTPanel method)
(PYME.LMVis.imageView.ImageViewPanel method)
OnZBinChange() (PYME.LMVis.genImageDialog.GenImageDialog method)
OnZero() (PYME.DSView.modules.composite.ShiftPanel method)
OnZPlotProfile() (PYME.DSView.modules.profilePlotting.profiler method)
(PYME.DSView.modules.squiggleTools.squiggle method)
OnZProjChanged() (PYME.DSView.DisplayOptionsPanel.OptionsPanel method)
openDB() (in module PYME.IO.FileUtils.thumbnailDatabase)
OpenEditor() (PYME.contrib.listctrlMixins.TextEditMixin method)
(PYME.ui.MetadataTree.TextEditMixin method)
openFile() (in module PYME.dataBrowser.open)
(in module PYME.IO.unifiedIO)
OpenFile() (PYME.LMVis.h5rNoGui.Pipeline method)
(PYME.LMVis.pipeline.Pipeline method)
openH5R() (in module PYME.IO.h5rFile)
OpticalFlow (class in PYME.recipes.processing)
Optim() (PYME.DSView.arrayViewPanel.ArrayViewPanel method)
Optimise() (PYME.DSView.displayOptions.DisplayOpts method)
OptionsPanel (class in PYME.DSView.DisplayOptionsPanel)
orientationChoices (PYME.DSView.DisplayOptionsPanel.OptionsPanel attribute)
origin (PYME.DSView.modules.composite.CompositeDialog attribute)
(PYME.IO.image.ImageStack attribute)
OSXActivateKludge() (in module PYME.DSView.dsviewer)
OutputModule (class in PYME.recipes.base)
outputs (PYME.recipes.base.ModuleBase attribute)
(PYME.recipes.base.ModuleCollection attribute)
outputs_in_namespace() (PYME.recipes.base.ModuleBase method)
overlap() (in module PYME.Analysis.Colocalisation.correlationCoeffs)
OverlayPanel (class in PYME.DSView.OverlaysPanel)

P

p_poisson() (in module PYME.Analysis.cramerRao)
pa (PYME.Acquire.microscope.microscope attribute)
pack() (PYME.contrib.lzw.BitPacker method)
PagingDecoder (class in PYME.contrib.lzw)
PagingEncoder (class in PYME.contrib.lzw)
pairMolecules() (in module PYME.LMVis.Extras.multiviewMapping)
PairwiseDistanceHistogram (class in PYME.recipes.measurement)
pan() (PYME.DSView.modules.graphViewPanel.MyNavigationToolbar method)
(PYME.DSView.modules.pupilView.MyNavigationToolbar method)
PanCamera() (PYME.Acquire.microscope.microscope method)
PanSpool (class in PYME.Acquire.ui.HDFSpoolFrame)
pareto() (in module PYME.Analysis.multicolourMeta)
(in module PYME.Analysis.points.DeClump.deClumpGUI)
(in module PYME.Analysis.points.EdgeDB.edgeTest)
(in module PYME.Analysis.points.QuadTree)
(in module PYME.Analysis.points.QuadTree.QTrend)
(in module PYME.Analysis.points.QuadTree.rendQT)
(in module PYME.Analysis.points.twoColourPlot)
(in module PYME.Deconv.deccs_mc)
(in module PYME.localization.FitFactories.SplitterObjFindR)
(in module PYME.localization.FitFactories.SplitterShiftEstFR)
(in module PYME.localization.Test.fitTestJig)
(in module PYME.localization.Test.fitTestJigWC)
(in module PYME.localization.twist)
(in module PYME.misc.aniso)
(in module PYME.misc.facsPlot)
(in module PYME.misc.kdFit)
parse() (PYME.DSView.logparser.logparser method)
parseLines() (PYME.misc.zemax.Surface method)
Parser (class in PYME.util.mProfile.colorize_db_t)
parseURL() (in module PYME.IO.clusterIO)
ParticleTracker (class in PYME.LMVis.Extras.objectMeasurements)
(class in PYME.LMVis.Extras.particleTracking)
ParticleTrackingView (class in PYME.DSView.modules.particleTracking)
PatchedServiceInfo (class in PYME.misc.pyme_zeroconf)
pd() (PYME.Deconv.richardsonLucyMVM.rldec method)
pearson() (in module PYME.Analysis.Colocalisation.correlationCoeffs)
performClassification() (in module PYME.Analysis.svmSegment)
PerFrameVar (class in PYME.LMVis.Extras.perFrameVariable)
permutation() (in module PYME.Analysis.multicolourMeta)
(in module PYME.Analysis.points.DeClump.deClumpGUI)
(in module PYME.Analysis.points.EdgeDB.edgeTest)
(in module PYME.Analysis.points.QuadTree)
(in module PYME.Analysis.points.QuadTree.QTrend)
(in module PYME.Analysis.points.QuadTree.rendQT)
(in module PYME.Analysis.points.twoColourPlot)
(in module PYME.Deconv.deccs_mc)
(in module PYME.localization.FitFactories.SplitterObjFindR)
(in module PYME.localization.FitFactories.SplitterShiftEstFR)
(in module PYME.localization.Test.fitTestJig)
(in module PYME.localization.Test.fitTestJigWC)
(in module PYME.localization.twist)
(in module PYME.misc.aniso)
(in module PYME.misc.facsPlot)
(in module PYME.misc.kdFit)
PHASE (PYME.Acquire.stackSettings.StackSettings attribute)
Phi (PYME.DSView.modules.blobMeasure.DataBlock attribute)
pickleSlice() (in module PYME.localization.FitFactories.fitCommon)
pickResultsServer() (in module PYME.IO.clusterResults)
piecewiseLinear() (in module PYME.Analysis.piecewise)
piecewiseMap (class in PYME.Analysis.piecewiseMapping)
piezoGoHome() (PYME.Acquire.stackSettings.StackSettings method)
pin_bits (in module PYME.ui.autoFoldPanel)
ping() (PYME.IO.clusterDuplication.DupManager method)
PinOpen() (PYME.ui.autoFoldPanel.foldingPane method)
Pipeline (class in PYME.LMVis.h5rNoGui)
(class in PYME.LMVis.pipeline)
pipeline_view (PYME.recipes.base.ModuleBase attribute)
(PYME.recipes.base.ModuleCollection attribute)
(PYME.recipes.tablefilters.FilterTable attribute)
pipeline_view_min (PYME.recipes.base.ModuleBase attribute)
PipelinePanel (class in PYME.LMVis.pipelineView)
PipelineTable (class in PYME.LMVis.pipelineView)
PipelineTableGrid (class in PYME.LMVis.pipelineView)
pixelSize (PYME.IO.image.ImageStack attribute)
pkmod_onestate() (in module PYME.Analysis.BleachProfile.intensProf)
player (class in PYME.DSView.modules.playback)
PlayEvents() (in module PYME.misc.eventSpy)
PlayPanel (class in PYME.DSView.modules.playback)
Plot (class in PYME.recipes.measurement)
plot_vertical() (in module PYME.recipes.recipeLayout)
plotCRB() (in module PYME.Analysis.PSFGen.genCRBcurves)
plotFolded() (in module PYME.LMVis.Extras.multiviewMapping)
PlotPanel (class in PYME.contrib.wxPlotPanel)
plotProfile() (in module PYME.util.mProfile.tProfile)
plotRes() (PYME.localization.Test.fitTestJig.fitTestJig method)
(PYME.localization.Test.fitTestJigSCMOS.fitTestJig method)
(PYME.localization.Test.fitTestJigWC.fitTestJig method)
plotResSimp() (PYME.localization.Test.fitTestJigSCMOS.fitTestJig method)
(PYME.localization.Test.fitTestJigWC.fitTestJig method)
PlotShiftField() (in module PYME.Analysis.points.twoColourPlot)
PlotShiftField2() (in module PYME.Analysis.points.twoColourPlot)
PlotShiftResiduals() (in module PYME.Analysis.points.twoColourPlot)
PlotShiftResidualsS() (in module PYME.Analysis.points.twoColourPlot)
Plug() (in module PYME.Acquire.ui.AnalysisSettingsUI)
(in module PYME.DSView.modules.LMAnalysis)
(in module PYME.DSView.modules.arrayView)
(in module PYME.DSView.modules.blobFinding)
(in module PYME.DSView.modules.blobMeasure)
(in module PYME.DSView.modules.coloc)
(in module PYME.DSView.modules.composite)
(in module PYME.DSView.modules.cropping)
(in module PYME.DSView.modules.deconvolution)
(in module PYME.DSView.modules.eventView)
(in module PYME.DSView.modules.fastGraphPanel)
(in module PYME.DSView.modules.filtering)
(in module PYME.DSView.modules.flowView)
(in module PYME.DSView.modules.fourierRingCorrelation)
(in module PYME.DSView.modules.graphViewPanel)
(in module PYME.DSView.modules.manualSegment)
(in module PYME.DSView.modules.metadataView)
(in module PYME.DSView.modules.multithreshold)
(in module PYME.DSView.modules.particleTracking)
(in module PYME.DSView.modules.playback)
(in module PYME.DSView.modules.prebleachExtraction)
(in module PYME.DSView.modules.profileFitting)
(in module PYME.DSView.modules.profilePlotting)
(in module PYME.DSView.modules.psfExtraction)
(in module PYME.DSView.modules.pupilView)
(in module PYME.DSView.modules.recipes)
(in module PYME.DSView.modules.segmentation)
(in module PYME.DSView.modules.sheetView)
(in module PYME.DSView.modules.shell)
(in module PYME.DSView.modules.sparkprepare)
(in module PYME.DSView.modules.splitter)
(in module PYME.DSView.modules.squiggleTools)
(in module PYME.DSView.modules.svmLabel)
(in module PYME.DSView.modules.synchronise)
(in module PYME.DSView.modules.tiling)
(in module PYME.DSView.modules.unmixing)
(in module PYME.DSView.modules.vis3D)
(in module PYME.DSView.modules.visgui)
(in module PYME.DSView.modules.webview)
(in module PYME.LMVis.Extras.flagZMotionArtifacts)
(in module PYME.LMVis.Extras.fusionUtils)
(in module PYME.LMVis.Extras.multiviewMapping)
(in module PYME.LMVis.Extras.objectMeasurements)
(in module PYME.LMVis.Extras.particleTracking)
(in module PYME.LMVis.Extras.perFrameVariable)
(in module PYME.LMVis.Extras.photophysics)
(in module PYME.LMVis.Extras.pointSetGeneration)
(in module PYME.LMVis.Extras.setBGImage)
(in module PYME.LMVis.Extras.shiftmapGenerator)
(in module PYME.LMVis.Extras.temperaturePlot)
(in module PYME.LMVis.Extras.vibration)
pointDensityAtDistance() (in module PYME.Analysis.Colocalisation.edtColoc)
PointDisplay (class in PYME.DSView.overlays)
PointDisplaySettings (class in PYME.LMVis.pointSettingsPanel)
pointlHood() (PYME.LMVis.segmentLL.segmenter method)
PointScanner (class in PYME.Acquire.Utils.MultiPointScanner)
(class in PYME.Acquire.Utils.pointScanner)
PointScanner3D (class in PYME.Acquire.Utils.pointScanner)
PointSettingsPanel (class in PYME.LMVis.pointSettingsPanel)
PointsHitTest() (PYME.DSView.arrayViewPanel.ArrayViewPanel method)
PointSource (class in PYME.LMVis.Extras.pointSetGeneration)
poisson() (in module PYME.Analysis.multicolourMeta)
(in module PYME.Analysis.points.DeClump.deClumpGUI)
(in module PYME.Analysis.points.EdgeDB.edgeTest)
(in module PYME.Analysis.points.QuadTree)
(in module PYME.Analysis.points.QuadTree.QTrend)
(in module PYME.Analysis.points.QuadTree.rendQT)
(in module PYME.Analysis.points.twoColourPlot)
(in module PYME.Deconv.deccs_mc)
(in module PYME.localization.FitFactories.SplitterObjFindR)
(in module PYME.localization.FitFactories.SplitterShiftEstFR)
(in module PYME.localization.Test.fitTestJig)
(in module PYME.localization.Test.fitTestJigWC)
(in module PYME.localization.twist)
(in module PYME.misc.aniso)
(in module PYME.misc.facsPlot)
(in module PYME.misc.kdFit)
PopContext() (PYME.Analysis.processLogger.ContextManager method)
populate() (PYME.LMVis.filterPane.FilterPanel method)
PopulateMetadata() (PYME.Acquire.sampleInformation.SampleInfoDialog method)
popZero() (in module PYME.ParallelTasks.taskQueue)
PositionSliders (class in PYME.Acquire.ui.positionUI)
PositionTracker (class in PYME.Acquire.positionTracker)
positivity() (in module PYME.Analysis.PSFEst.psfQuality)
posttask() (PYME.ParallelTasks.distributor.TaskQueue method)
postTask() (PYME.ParallelTasks.DSTaskQueue.DSTaskQueue method)
(PYME.ParallelTasks.HDFTaskQueue.HDFTaskQueue method)
(PYME.ParallelTasks.taskQueue.TaskQueue method)
(PYME.ParallelTasks.taskServerZC.TaskQueueSet method)
postTasks() (PYME.ParallelTasks.DSTaskQueue.DSTaskQueue method)
(PYME.ParallelTasks.HDFTaskQueue.HDFTaskQueue method)
(PYME.ParallelTasks.taskQueue.TaskQueue method)
(PYME.ParallelTasks.taskServerZC.TaskQueueSet method)
power() (in module PYME.Analysis.multicolourMeta)
(in module PYME.Analysis.points.DeClump.deClumpGUI)
(in module PYME.Analysis.points.EdgeDB.edgeTest)
(in module PYME.Analysis.points.QuadTree)
(in module PYME.Analysis.points.QuadTree.QTrend)
(in module PYME.Analysis.points.QuadTree.rendQT)
(in module PYME.Analysis.points.twoColourPlot)
(in module PYME.Deconv.deccs_mc)
(in module PYME.localization.FitFactories.SplitterObjFindR)
(in module PYME.localization.FitFactories.SplitterShiftEstFR)
(in module PYME.localization.Test.fitTestJig)
(in module PYME.localization.Test.fitTestJigWC)
(in module PYME.localization.twist)
(in module PYME.misc.aniso)
(in module PYME.misc.facsPlot)
(in module PYME.misc.kdFit)
powerMod2D() (in module PYME.Analysis.Tracking.trackUtils)
PrebleachExtractor (class in PYME.DSView.modules.prebleachExtraction)
prefillSampleData() (in module PYME.Acquire.sampleInformation)
PreflightCheck() (PYME.Acquire.protocol.Protocol method)
(PYME.Acquire.protocol.TaskListProtocol method)
PreflightCheckItem (class in PYME.Acquire.protocol)
prep() (PYME.Deconv.dec.dec_conv method)
(PYME.Deconv.deccs.dec_conv method)
(PYME.Deconv.deccs2.dec_conv method)
(PYME.Deconv.deccs2.dec_sparse method)
(PYME.Deconv.deccs_mc.dec_conv method)
Prepare() (PYME.Acquire.frameWrangler.FrameWrangler method)
prepare() (PYME.Analysis.PSFEst.dec.dec_psf method)
(PYME.Deconv.dec.dec_4pi_c method)
preparePSF() (in module PYME.localization.ofind_pri)
(in module PYME.localization.ofind_xcorr)
(in module PYME.localization.ofind_xcorr_fw)
prepResultsFile() (PYME.ParallelTasks.HDFTaskQueue.HDFResultsTaskQueue method)
(PYME.ParallelTasks.HDFTaskQueue.HDFTaskQueue method)
principalAxis (PYME.DSView.modules.blobMeasure.DataBlock attribute)
print_catalog_list() (in module PYME.misc.read_agf)
print_cycles() (in module PYME.misc.findCycles)
print_glass_list() (in module PYME.misc.read_agf)
print_glass_report() (in module PYME.misc.read_agf)
probeAwareFindClumps() (in module PYME.Analysis.points.multiview)
probePoint() (PYME.LMVis.segmentLL.segmenter method)
processDir() (in module PYME.Analysis.Auto.auto_drift_render)
(in module PYME.Analysis.Auto.auto_photophysics)
processIntensityTrace() (in module PYME.Analysis.BleachProfile.rawIntensity)
procSkelFile() (in module PYME.Analysis.angleFilter)
prof_callback() (PYME.util.fProfile.fProfile.thread_profiler method)
profile_off() (in module PYME.util.mProfile.tProfile)
profile_on() (in module PYME.util.mProfile.tProfile)
profileOff() (in module PYME.util.mProfile.mProfile)
(PYME.util.fProfile.fProfile.thread_profiler method)
profileOn() (in module PYME.util.mProfile.mProfile)
(PYME.util.fProfile.fProfile.thread_profiler method)
profiler (class in PYME.DSView.modules.profilePlotting)
profiler() (in module PYME.util.mProfile.tProfile)
profOff() (in module PYME.util.mProfile.p)
profOn() (in module PYME.util.mProfile.p)
progPanel (class in PYME.LMVis.progGraph)
ProgressSelection() (PYME.DSView.arrayViewPanel.ArrayViewPanel method)
(PYME.LMVis.imageView.ImageViewPanel method)
Project() (PYME.DSView.modules.filtering.filterer method)
ProjectOnVector (class in PYME.recipes.processing)
projectZ() (in module PYME.misc.zernike)
propagate() (PYME.Analysis.PSFGen.fourier.FourierPropagator method)
(PYME.Analysis.PSFGen.fourierHNA.FourierPropagatorClipHNA method)
(PYME.Analysis.PSFGen.fourierHNA.FourierPropagatorHNA method)
propagate_r() (PYME.Analysis.PSFGen.fourierHNA.FourierPropagatorClipHNA method)
(PYME.Analysis.PSFGen.fourierHNA.FourierPropagatorHNA method)
Protocol (class in PYME.Acquire.protocol)
protocol_version (PYME.ParallelTasks.HTTPDataServer.PYMEHTTPRequestHandler attribute)
(PYME.ParallelTasks.httpSpoolTarget.GetHandler attribute)
(PYME.ParallelTasks.webframework.JSONAPIRequestHandler attribute)
ProvideStackMetadata() (PYME.Acquire.stackSettings.StackSettings method)
pruneDependanciesFromNamespace() (PYME.recipes.base.ModuleCollection method)
PseudoPointList (class in PYME.localization.ofind)
(class in PYME.localization.ofind3d)
(class in PYME.localization.ofind_nofilt)
(class in PYME.localization.ofind_pri)
(class in PYME.localization.ofind_split)
(class in PYME.localization.ofind_xcorr)
(class in PYME.localization.ofind_xcorr_fw)
psf_calc() (PYME.Analysis.PSFEst.dec.dec_psf method)
(PYME.Deconv.dec.dec_4pi method)
(PYME.Deconv.dec.dec_bead method)
(PYME.Deconv.dec.dec_conv method)
(PYME.Deconv.deccs.dec_bead method)
(PYME.Deconv.deccs.dec_conv method)
(PYME.Deconv.deccs.dec_gauss method)
(PYME.Deconv.deccs2.dec_bead method)
(PYME.Deconv.deccs2.dec_conv method)
(PYME.Deconv.deccs2.dec_gauss method)
(PYME.Deconv.deccs2.dec_sparse method)
(PYME.Deconv.deccs2.dec_subsamp method)
(PYME.Deconv.deccs_mc.dec_bead method)
(PYME.Deconv.deccs_mc.dec_conv method)
(PYME.Deconv.deccs_mc.dec_gauss method)
(PYME.Deconv.richardsonLucy.dec_conv method)
(PYME.Deconv.richardsonLucy.dec_conv_slow method)
(PYME.Deconv.richardsonLucy.rlbead method)
(PYME.Deconv.richardsonLucyMV.dec_conv method)
(PYME.Deconv.richardsonLucyMV.dec_conv_slow method)
(PYME.Deconv.richardsonLucyMV.rlbead method)
(PYME.Deconv.richardsonLucyMVM.dec_conv method)
(PYME.Deconv.richardsonLucyMVM.dec_conv_slow method)
(PYME.Deconv.richardsonLucyMVM.rlbead method)
(PYME.Deconv.wiener.dec_wiener method)
PSFExporter (class in PYME.IO.dataExporter)
psfExtractor (class in PYME.DSView.modules.psfExtraction)
PSFFitFactory (class in PYME.localization.FitFactories.InterpFitR)
(class in PYME.localization.FitFactories.LatPSFFitR)
(class in PYME.localization.FitFactories.PRInterpFitQR)
(class in PYME.localization.FitFactories.PRInterpFitR)
PSFFitResult (class in PYME.localization.FitFactories.LatPSFFitR)
PSFFitResultR() (in module PYME.localization.FitFactories.InterpFitR)
(in module PYME.localization.FitFactories.LatPSFFitR)
(in module PYME.localization.FitFactories.PRInterpFitQR)
(in module PYME.localization.FitFactories.PRInterpFitR)
(in module PYME.localization.FitFactories.SplitterFitInterpBNR)
(in module PYME.localization.FitFactories.SplitterFitInterpNR)
PsfFromPupil() (in module PYME.Analysis.PSFGen.fourierHNA)
PsfFromPupilFP() (in module PYME.Analysis.PSFGen.fourierHNA)
PsfFromPupilVect() (in module PYME.Analysis.PSFGen.fourierHNA)
PsfFromPupilVectFP() (in module PYME.Analysis.PSFGen.fourierHNA)
PSFROIs (class in PYME.DSView.overlays)
pull_and_deblock() (PYME.Deconv.tq_block_dec.blocking_deconv method)
purge() (PYME.Acquire.frameWrangler.FrameWrangler method)
(PYME.ParallelTasks.HDFTaskQueue.HDFResultsTaskQueue method)
(PYME.ParallelTasks.taskQueue.TaskQueue method)
(PYME.ParallelTasks.taskServerZC.TaskQueueSet method)
push_deconv_tasks() (PYME.Deconv.tq_block_dec.blocking_deconv method)
pushImages() (PYME.DSView.modules.LMAnalysis.AnalysisController method)
pushImagesCluster() (PYME.DSView.modules.LMAnalysis.AnalysisController method)
pushImagesDS() (PYME.DSView.modules.LMAnalysis.AnalysisController method)
pushImagesHDF() (PYME.DSView.modules.LMAnalysis.AnalysisController method)
pushImagesQueue() (PYME.DSView.modules.LMAnalysis.AnalysisController method)
putEvent() (PYME.ParallelTasks.httpSpoolTarget.H5File method)
putFile() (in module PYME.IO.clusterIO)
putFiles() (in module PYME.IO.clusterIO)
putFrame() (PYME.ParallelTasks.httpSpoolTarget.H5File method)
putFrames() (PYME.ParallelTasks.httpSpoolTarget.H5File method)
putMetadata() (PYME.ParallelTasks.httpSpoolTarget.H5File method)
putMetadataEntry() (PYME.ParallelTasks.httpSpoolTarget.H5File method)
putPZFFrame() (PYME.ParallelTasks.httpSpoolTarget.H5File method)
putPZFFrames() (PYME.ParallelTasks.httpSpoolTarget.H5File method)
PYME (module)
PYME.Acquire (module)
PYME.Acquire.acquiremainframe (module)
PYME.Acquire.ActionManager (module)
PYME.Acquire.autofocus (module)
PYME.Acquire.eventLog (module)
PYME.Acquire.ExecTools (module)
PYME.Acquire.frameWrangler (module)
PYME.Acquire.HDFSpooler (module)
PYME.Acquire.HTTPHDFSpooler (module)
PYME.Acquire.HTTPSpooler (module)
PYME.Acquire.microscope (module)
PYME.Acquire.mytimer (module)
PYME.Acquire.positionTracker (module)
PYME.Acquire.protocol (module)
PYME.Acquire.PYMEAcquire (module)
PYME.Acquire.QueueSpooler (module)
PYME.Acquire.sampleInformation (module)
PYME.Acquire.setup (module)
PYME.Acquire.SpoolController (module)
PYME.Acquire.Spooler (module)
PYME.Acquire.stackSettings (module)
PYME.Acquire.ui (module)
PYME.Acquire.ui.actionUI (module)
PYME.Acquire.ui.AnalysisSettingsUI (module)
PYME.Acquire.ui.HDFSpoolFrame (module)
PYME.Acquire.ui.intsliders (module)
PYME.Acquire.ui.lasersliders (module)
PYME.Acquire.ui.positionUI (module)
PYME.Acquire.ui.preflight (module)
PYME.Acquire.ui.selectCameraPanel (module)
PYME.Acquire.ui.seqdialog (module)
PYME.Acquire.ui.splashScreen (module)
PYME.Acquire.ui.voxelSizeDialog (module)
PYME.Acquire.Utils (module)
PYME.Acquire.Utils.fastTiler (module)
PYME.Acquire.Utils.MultiPointScanner (module)
PYME.Acquire.Utils.pointScanner (module)
PYME.Acquire.Utils.sarcSpacing (module)
PYME.Acquire.Utils.vibrationAnalysis (module)
PYME.Acquire.zScanner (module)
PYME.Analysis (module)
PYME.Analysis.angleFilter (module)
PYME.Analysis.annealThresh (module)
PYME.Analysis.Auto (module)
PYME.Analysis.Auto.auto_drift_render (module)
PYME.Analysis.Auto.auto_photophysics (module)
PYME.Analysis.binAvg (module)
PYME.Analysis.BleachProfile (module)
PYME.Analysis.BleachProfile.deMod (module)
PYME.Analysis.BleachProfile.fitRecover (module)
PYME.Analysis.BleachProfile.intensProf (module)
PYME.Analysis.BleachProfile.kinModels (module)
PYME.Analysis.BleachProfile.rawIntensity (module)
PYME.Analysis.buffers (module)
PYME.Analysis.Colocalisation (module)
PYME.Analysis.Colocalisation.colocScaleDep (module)
PYME.Analysis.Colocalisation.correlationCoeffs (module)
PYME.Analysis.Colocalisation.distColoc (module)
PYME.Analysis.Colocalisation.edtColoc (module)
PYME.Analysis.cramerRao (module)
PYME.Analysis.deTile (module)
PYME.Analysis.implicitFilter (module)
PYME.Analysis.MetaData (module)
PYME.Analysis.moments (module)
PYME.Analysis.multicolourMeta (module)
PYME.Analysis.optic_flow (module)
PYME.Analysis.piecewise (module)
PYME.Analysis.piecewiseMapping (module)
PYME.Analysis.points (module)
PYME.Analysis.points.astigmatism (module)
PYME.Analysis.points.astigmatism.astigTools (module)
PYME.Analysis.points.DeClump (module)
PYME.Analysis.points.DeClump.deClumpGUI (module)
PYME.Analysis.points.DeClump.pyDeClump (module)
PYME.Analysis.points.DeClump.setup (module)
PYME.Analysis.points.DeClump.testClump (module)
PYME.Analysis.points.DistHist (module)
PYME.Analysis.points.DistHist.setup (module)
PYME.Analysis.points.EdgeDB (module)
PYME.Analysis.points.EdgeDB.edges (module)
PYME.Analysis.points.EdgeDB.edgeTest (module)
PYME.Analysis.points.EdgeDB.segment (module)
PYME.Analysis.points.EdgeDB.setup (module)
PYME.Analysis.points.multiview (module)
PYME.Analysis.points.QuadTree (module)
PYME.Analysis.points.QuadTree.pointQT (module)
PYME.Analysis.points.QuadTree.pointQTF (module)
PYME.Analysis.points.QuadTree.QTrend (module)
PYME.Analysis.points.QuadTree.qtUtils (module)
PYME.Analysis.points.QuadTree.rendQT (module)
PYME.Analysis.points.setup (module)
PYME.Analysis.points.SoftRend (module)
PYME.Analysis.points.SoftRend.setup (module)
PYME.Analysis.points.SoftRend.testTetrahedra (module)
PYME.Analysis.points.twoColour (module)
PYME.Analysis.points.twoColourPlot (module)
PYME.Analysis.processLogger (module)
PYME.Analysis.PSFEst (module)
PYME.Analysis.PSFEst.dec (module)
PYME.Analysis.PSFEst.extractImages (module)
PYME.Analysis.PSFEst.psfQuality (module)
PYME.Analysis.PSFGen (module)
PYME.Analysis.PSFGen.fourier (module)
PYME.Analysis.PSFGen.fourierHNA (module)
PYME.Analysis.PSFGen.genCRBcurves (module)
PYME.Analysis.PSFGen.nijboer_zernike (module)
PYME.Analysis.PSFGen.setup (module)
PYME.Analysis.PSFGen.test_ps_app (module)
PYME.Analysis.setup (module)
PYME.Analysis.svmSegment (module)
PYME.Analysis.tCluster (module)
PYME.Analysis.thresholding (module)
PYME.Analysis.Tracking (module)
PYME.Analysis.Tracking.msd (module)
PYME.Analysis.Tracking.tracking (module)
PYME.Analysis.Tracking.trackUtils (module)
PYME.config (module)
PYME.contrib (module)
PYME.contrib.aniso (module)
PYME.contrib.aniso.aniso (module)
PYME.contrib.auiFloatBook (module)
PYME.contrib.congrid (module)
PYME.contrib.gohlke (module)
PYME.contrib.gohlke.czifile (module)
PYME.contrib.gohlke.fcsfiles (module)
PYME.contrib.gohlke.setup (module)
PYME.contrib.gohlke.tifffile (module)
PYME.contrib.listctrlMixins (module)
PYME.contrib.lzw (module)
PYME.contrib.pad (module)
PYME.contrib.pad.info_pad (module)
PYME.contrib.pad.pad (module)
PYME.contrib.setup (module)
PYME.contrib.TextCtrlAutoComplete (module)
PYME.contrib.wxPlotPanel (module)
PYME.dataBrowser (module)
PYME.dataBrowser.dirView (module)
PYME.dataBrowser.open (module)
PYME.dataBrowser.settings (module)
PYME.dataBrowser.thumbnails (module)
PYME.Deconv (module)
PYME.Deconv.beadGen (module)
PYME.Deconv.dec (module)
PYME.Deconv.dec_test (module)
PYME.Deconv.deccs (module)
PYME.Deconv.deccs2 (module)
PYME.Deconv.deccs_mc (module)
PYME.Deconv.deconvDialogs (module)
PYME.Deconv.decTask (module)
PYME.Deconv.decThread (module)
PYME.Deconv.fftwWisdom (module)
PYME.Deconv.read_kdf (module)
PYME.Deconv.richardsonLucy (module)
PYME.Deconv.richardsonLucyMV (module)
PYME.Deconv.richardsonLucyMVM (module)
PYME.Deconv.test_block_dec (module)
PYME.Deconv.tq_block_dec (module)
PYME.Deconv.wiener (module)
PYME.Deconv.write_kdf (module)
PYME.DSView (module)
PYME.DSView.arrayViewPanel (module)
PYME.DSView.displayOptions (module)
PYME.DSView.DisplayOptionsPanel (module)
PYME.DSView.displaySettingsPanel (module)
PYME.DSView.dsviewer (module)
PYME.DSView.eventLogViewer (module)
PYME.DSView.fitInfo (module)
PYME.DSView.htmlServe (module)
PYME.DSView.logparser (module)
PYME.DSView.LUT (module)
PYME.DSView.LUT.setup (module)
PYME.DSView.LUT.test_lut (module)
PYME.DSView.modules (module)
PYME.DSView.modules.arrayView (module)
PYME.DSView.modules.blobFinding (module)
PYME.DSView.modules.blobMeasure (module)
PYME.DSView.modules.coloc (module)
PYME.DSView.modules.composite (module)
PYME.DSView.modules.cropping (module)
PYME.DSView.modules.deconvolution (module)
PYME.DSView.modules.eventView (module)
PYME.DSView.modules.extractBlobs (module)
PYME.DSView.modules.fastGraphPanel (module)
PYME.DSView.modules.filtering (module)
PYME.DSView.modules.flowView (module)
PYME.DSView.modules.fourierRingCorrelation (module)
PYME.DSView.modules.graphViewPanel (module)
PYME.DSView.modules.LMAnalysis (module)
PYME.DSView.modules.manualSegment (module)
PYME.DSView.modules.measure (module)
PYME.DSView.modules.measure.filterPan (module)
PYME.DSView.modules.metadataView (module)
PYME.DSView.modules.multithreshold (module)
PYME.DSView.modules.particleTracking (module)
PYME.DSView.modules.playback (module)
PYME.DSView.modules.prebleachExtraction (module)
PYME.DSView.modules.profileFitting (module)
PYME.DSView.modules.profilePlotting (module)
PYME.DSView.modules.psfExtraction (module)
PYME.DSView.modules.pupilView (module)
PYME.DSView.modules.recipes (module)
PYME.DSView.modules.segmentation (module)
PYME.DSView.modules.sheetView (module)
PYME.DSView.modules.shell (module)
PYME.DSView.modules.sparkprepare (module)
PYME.DSView.modules.splitter (module)
PYME.DSView.modules.squiggleTools (module)
PYME.DSView.modules.svmLabel (module)
PYME.DSView.modules.synchronise (module)
PYME.DSView.modules.tiling (module)
PYME.DSView.modules.unmixing (module)
PYME.DSView.modules.vis3D (module)
PYME.DSView.modules.visgui (module)
PYME.DSView.modules.webview (module)
PYME.DSView.overlays (module)
PYME.DSView.OverlaysPanel (module)
PYME.DSView.scrolledImagePanel (module)
PYME.DSView.setup (module)
PYME.DSView.splashScreen (module)
PYME.DSView.voxSizeDialog (module)
PYME.IO (module)
PYME.IO.clusterDuplication (module)
PYME.IO.clusterExport (module)
PYME.IO.clusterIO (module)
PYME.IO.clusterResults (module)
PYME.IO.dataExporter (module)
PYME.IO.DataSources (module)
PYME.IO.DataSources.AlignDataSource (module)
PYME.IO.DataSources.BaseDataSource (module)
PYME.IO.DataSources.BGSDataSource (module)
PYME.IO.DataSources.BioformatsDataSource (module)
PYME.IO.DataSources.BufferedDataSource (module)
PYME.IO.DataSources.ClusterPZFDataSource (module)
PYME.IO.DataSources.DcimgDataSource (module)
PYME.IO.DataSources.FlatFieldDataSource (module)
PYME.IO.DataSources.HDFDataSource (module)
PYME.IO.DataSources.HTTPDataSource (module)
PYME.IO.DataSources.ImageSeriesDataSource (module)
PYME.IO.DataSources.MultiviewDataSource (module)
PYME.IO.DataSources.TiffDataSource (module)
PYME.IO.DataSources.TQDataSource (module)
PYME.IO.DataSources.UnsplitDataSource (module)
PYME.IO.dataWrap (module)
PYME.IO.dcimg (module)
PYME.IO.FileUtils (module)
PYME.IO.FileUtils.compHdf (module)
PYME.IO.FileUtils.fileID (module)
PYME.IO.FileUtils.fnlGen (module)
PYME.IO.FileUtils.freeSpace (module)
PYME.IO.FileUtils.h5ExFrames (module)
PYME.IO.FileUtils.h5rToTxt (module)
PYME.IO.FileUtils.h5ToTiffSeries (module)
PYME.IO.FileUtils.IJLut (module)
PYME.IO.FileUtils.nameUtils (module)
PYME.IO.FileUtils.RawToHdf5 (module)
PYME.IO.FileUtils.readSpeckle (module)
PYME.IO.FileUtils.readTiff (module)
PYME.IO.FileUtils.saveTiffStack (module)
PYME.IO.FileUtils.setup (module)
PYME.IO.FileUtils.SPAD (module)
PYME.IO.FileUtils.thumbnailDatabase (module)
PYME.IO.FileUtils.TiffSeqToHdf5 (module)
PYME.IO.h5rFile (module)
PYME.IO.image (module)
PYME.IO.MetaDataHandler (module)
PYME.IO.PZFFormat (module)
PYME.IO.setup (module)
PYME.IO.tabular (module)
PYME.IO.testClusterSpooling (module)
PYME.IO.unifiedIO (module)
PYME.LMVis (module)
PYME.LMVis.colourFilterGUI (module)
PYME.LMVis.colourPanel (module)
PYME.LMVis.displayPane (module)
PYME.LMVis.dyeRatios (module)
PYME.LMVis.editFilterDialog (module)
PYME.LMVis.Extras (module)
PYME.LMVis.Extras.flagZMotionArtifacts (module)
PYME.LMVis.Extras.fusionUtils (module)
PYME.LMVis.Extras.multiviewMapping (module)
PYME.LMVis.Extras.objectMeasurements (module)
PYME.LMVis.Extras.particleTracking (module)
PYME.LMVis.Extras.perFrameVariable (module)
PYME.LMVis.Extras.photophysics (module)
PYME.LMVis.Extras.pointSetGeneration (module)
PYME.LMVis.Extras.setBGImage (module)
PYME.LMVis.Extras.shiftmapGenerator (module)
PYME.LMVis.Extras.temperaturePlot (module)
PYME.LMVis.Extras.vibration (module)
PYME.LMVis.filterPane (module)
PYME.LMVis.gen3DTriangs (module)
PYME.LMVis.genImageDialog (module)
PYME.LMVis.h5rNoGui (module)
PYME.LMVis.imageView (module)
PYME.LMVis.importTextDialog (module)
PYME.LMVis.objectMeasure (module)
PYME.LMVis.pipeline (module)
PYME.LMVis.pipelineView (module)
PYME.LMVis.pointSettingsPanel (module)
PYME.LMVis.progGraph (module)
PYME.LMVis.quadTreeSettings (module)
PYME.LMVis.renderers (module)
PYME.LMVis.rendGauss (module)
PYME.LMVis.segmentLL (module)
PYME.LMVis.setup (module)
PYME.LMVis.setup_exe (module)
PYME.LMVis.statusLog (module)
PYME.LMVis.tcHist (module)
PYME.LMVis.triBlobs (module)
PYME.LMVis.visHelpers (module)
PYME.LMVis.visHelpersMin (module)
PYME.LMVis.widefieldify (module)
PYME.LMVis.workspaceTree (module)
PYME.localization (module)
PYME.localization.cInterp (module)
PYME.localization.cInterp.setup (module)
PYME.localization.cModels (module)
PYME.localization.cModels.setup (module)
PYME.localization.FitFactories (module)
PYME.localization.FitFactories.AstigGaussFitFR (module)
PYME.localization.FitFactories.AstigGaussGPUFitFR (module)
PYME.localization.FitFactories.ConfocCOIR (module)
PYME.localization.FitFactories.DumbellFitR (module)
PYME.localization.FitFactories.FFBase (module)
PYME.localization.FitFactories.fitCommon (module)
PYME.localization.FitFactories.Gauss3DFitR (module)
PYME.localization.FitFactories.GaussFitConstrR (module)
PYME.localization.FitFactories.GaussMultifitLinesR (module)
PYME.localization.FitFactories.GaussMultifitR (module)
PYME.localization.FitFactories.GaussMultifitSR (module)
PYME.localization.FitFactories.InterpFitR (module)
PYME.localization.FitFactories.InterpFitWFR (module)
PYME.localization.FitFactories.Interpolators (module)
PYME.localization.FitFactories.Interpolators.baseInterpolator (module)
PYME.localization.FitFactories.Interpolators.CSInterpolator (module)
PYME.localization.FitFactories.Interpolators.CubeSInterpolatorP (module)
PYME.localization.FitFactories.Interpolators.CubicSplineInterpolator (module)
PYME.localization.FitFactories.Interpolators.LinearInterpolator (module)
PYME.localization.FitFactories.Interpolators.LinearPInterpolatorP (module)
PYME.localization.FitFactories.LatFitCOIR (module)
PYME.localization.FitFactories.LatGaussFitFR (module)
PYME.localization.FitFactories.LatObjFindFR (module)
PYME.localization.FitFactories.LatPSFFitR (module)
PYME.localization.FitFactories.PRInterpFitQR (module)
PYME.localization.FitFactories.PRInterpFitR (module)
PYME.localization.FitFactories.SpecGaussFitFR (module)
PYME.localization.FitFactories.SplitterFitCOIR (module)
PYME.localization.FitFactories.SplitterFitFNR (module)
PYME.localization.FitFactories.SplitterFitFusionR (module)
PYME.localization.FitFactories.SplitterFitInterpBNR (module)
PYME.localization.FitFactories.SplitterFitInterpNR (module)
PYME.localization.FitFactories.SplitterMultifitSR (module)
PYME.localization.FitFactories.SplitterObjFindR (module)
PYME.localization.FitFactories.SplitterROIExtractNR (module)
PYME.localization.FitFactories.SplitterShiftEstFR (module)
PYME.localization.FitFactories.zEstimators (module)
PYME.localization.FitFactories.zEstimators.astigEstimator (module)
PYME.localization.FitFactories.zEstimators.biplaneEstimator (module)
PYME.localization.FitFactories.zEstimators.priEstimator (module)
PYME.localization.lev_gfit (module)
PYME.localization.lev_gfit.setup (module)
PYME.localization.MetaDataEdit (module)
PYME.localization.ofind (module)
PYME.localization.ofind3d (module)
PYME.localization.ofind_nofilt (module)
PYME.localization.ofind_pri (module)
PYME.localization.ofind_split (module)
PYME.localization.ofind_xcorr (module)
PYME.localization.ofind_xcorr_fw (module)
PYME.localization.remFitBuf (module)
PYME.localization.setup (module)
PYME.localization.Test (module)
PYME.localization.Test.fitTestJig (module)
PYME.localization.Test.fitTestJigSCMOS (module)
PYME.localization.Test.fitTestJigWC (module)
PYME.localization.twist (module)
PYME.misc (module)
PYME.misc.aniso (module)
PYME.misc.colorsys (module)
PYME.misc.computerName (module)
PYME.misc.coverslipGeometries (module)
PYME.misc.cython_numpy_monkey (module)
PYME.misc.depGraph (module)
PYME.misc.dirSize (module)
PYME.misc.diskCleanup (module)
PYME.misc.djangoRecarray (module)
PYME.misc.editgrid (module)
PYME.misc.eventSpy (module)
PYME.misc.extraCMaps (module)
PYME.misc.facsPlot (module)
PYME.misc.fbpIcons (module)
PYME.misc.findCycles (module)
PYME.misc.glassModel (module)
PYME.misc.hash32 (module)
PYME.misc.kdFit (module)
PYME.misc.locate (module)
PYME.misc.memUsage (module)
PYME.misc.mock_ctypes (module)
PYME.misc.mock_traitsui (module)
PYME.misc.pyme_zeroconf (module)
PYME.misc.pyro_tracebacks (module)
PYME.misc.read_agf (module)
PYME.misc.sffake (module)
PYME.misc.snells (module)
PYME.misc.sqlitendarray (module)
PYME.misc.startCommentify (module)
PYME.misc.tempLogger (module)
PYME.misc.tempMonitor (module)
PYME.misc.TiffImagePlugin (module)
PYME.misc.TiSettings (module)
PYME.misc.wxThread (module)
PYME.misc.zemax (module)
PYME.misc.zernike (module)
PYME.ParallelTasks (module)
PYME.ParallelTasks.dataserver_wsgi (module)
PYME.ParallelTasks.distribution (module)
PYME.ParallelTasks.distributor (module)
PYME.ParallelTasks.DSTaskQueue (module)
PYME.ParallelTasks.fitMon (module)
PYME.ParallelTasks.fitMonP (module)
PYME.ParallelTasks.HDFTaskQueue (module)
PYME.ParallelTasks.HTTPDataServer (module)
PYME.ParallelTasks.httpSpoolTarget (module)
PYME.ParallelTasks.HTTPTaskPusher (module)
PYME.ParallelTasks.launchWorkers (module)
PYME.ParallelTasks.nodeserver (module)
PYME.ParallelTasks.PYMEDistributor (module)
PYME.ParallelTasks.PYMENodeServer (module)
PYME.ParallelTasks.setup_exe (module)
PYME.ParallelTasks.taskDef (module)
PYME.ParallelTasks.taskQueue (module)
PYME.ParallelTasks.taskServerZC (module)
PYME.ParallelTasks.taskWorkerHTTP (module)
PYME.ParallelTasks.taskWorkerZC (module)
PYME.ParallelTasks.webframework (module)
PYME.recipes (module)
PYME.recipes.bakeshop (module)
PYME.recipes.base (module)
PYME.recipes.batchProcess (module)
PYME.recipes.filters (module)
PYME.recipes.measurement (module)
PYME.recipes.modules (module)
PYME.recipes.processing (module)
PYME.recipes.recipeGui (module)
PYME.recipes.recipeLayout (module)
PYME.recipes.runRecipe (module)
PYME.recipes.skfilters (module)
PYME.recipes.tablefilters (module)
PYME.recipes.tracking (module)
PYME.resources (module)
PYME.resources.setup (module)
PYME.setup (module)
PYME.setup_exe (module)
PYME.ui (module)
PYME.ui.AUIFrame (module)
PYME.ui.autoFoldPanel (module)
PYME.ui.editList (module)
PYME.ui.fastGraph (module)
PYME.ui.histLimits (module)
PYME.ui.MetadataTree (module)
PYME.ui.recArrayView (module)
PYME.update_version (module)
PYME.util (module)
PYME.util.fProfile (module)
PYME.util.fProfile.convertProfile (module)
PYME.util.fProfile.fProfile (module)
PYME.util.fProfile.viewProfile (module)
PYME.util.mProfile (module)
PYME.util.mProfile.colorize_db_t (module)
PYME.util.mProfile.mProfile (module)
PYME.util.mProfile.p (module)
PYME.util.mProfile.tProfile (module)
PYME.util.shmarray (module)
PYME.util.shmarray.shmarray (module)
PYME.util.shmarray.shmTest (module)
PYME.version (module)
PYMEHTTPRequestHandler (class in PYME.ParallelTasks.HTTPDataServer)
PYMEMainFrame (class in PYME.Acquire.acquiremainframe)

Q

qsToRecarray() (in module PYME.misc.djangoRecarray)
qtBranchNode (class in PYME.Analysis.points.QuadTree.pointQT)
(class in PYME.Analysis.points.QuadTree.pointQTF)
qtLeafNode (class in PYME.Analysis.points.QuadTree.pointQT)
(class in PYME.Analysis.points.QuadTree.pointQTF)
qtNode (class in PYME.Analysis.points.QuadTree.pointQT)
(class in PYME.Analysis.points.QuadTree.pointQTF)
qtRec (class in PYME.Analysis.points.QuadTree.pointQT)
(class in PYME.Analysis.points.QuadTree.pointQTF)
QTRendererNode (class in PYME.Analysis.points.QuadTree.QTrend)
qtRoot (class in PYME.Analysis.points.QuadTree.pointQT)
(class in PYME.Analysis.points.QuadTree.pointQTF)
QuadTreeRenderer (class in PYME.LMVis.renderers)
QuadTreeSettings (class in PYME.LMVis.quadTreeSettings)
QuadTreeSettingsPanel (class in PYME.LMVis.quadTreeSettings)
QueueAction() (PYME.Acquire.ActionManager.ActionManager method)
QueueMDHandler (class in PYME.IO.MetaDataHandler)
queues() (PYME.ParallelTasks.distributor.CPDistributor method)

R

R (PYME.DSView.modules.blobMeasure.DataBlock attribute)
r (PYME.DSView.modules.blobMeasure.DataBlock attribute)
RadialDistN() (PYME.DSView.modules.blobMeasure.BlobObject method)
radialDistN() (PYME.DSView.modules.blobMeasure.BlobObject method)
rand() (in module PYME.Analysis.BleachProfile.deMod)
(in module PYME.Analysis.Colocalisation.colocScaleDep)
(in module PYME.Analysis.PSFEst.dec)
(in module PYME.Analysis.multicolourMeta)
(in module PYME.Analysis.points.DeClump.deClumpGUI)
(in module PYME.Analysis.points.EdgeDB.edgeTest)
(in module PYME.Analysis.points.QuadTree)
(in module PYME.Analysis.points.QuadTree.QTrend)
(in module PYME.Analysis.points.QuadTree.rendQT)
(in module PYME.Analysis.points.twoColourPlot)
(in module PYME.Deconv.dec)
(in module PYME.Deconv.deccs_mc)
(in module PYME.Deconv.read_kdf)
(in module PYME.Deconv.richardsonLucy)
(in module PYME.Deconv.richardsonLucyMV)
(in module PYME.Deconv.richardsonLucyMVM)
(in module PYME.Deconv.tq_block_dec)
(in module PYME.Deconv.write_kdf)
(in module PYME.LMVis.rendGauss)
(in module PYME.localization.FitFactories.SplitterObjFindR)
(in module PYME.localization.FitFactories.SplitterShiftEstFR)
(in module PYME.localization.Test.fitTestJig)
(in module PYME.localization.Test.fitTestJigWC)
(in module PYME.localization.twist)
(in module PYME.misc.aniso)
(in module PYME.misc.facsPlot)
(in module PYME.misc.kdFit)
randint() (in module PYME.Analysis.multicolourMeta)
(in module PYME.Analysis.points.DeClump.deClumpGUI)
(in module PYME.Analysis.points.EdgeDB.edgeTest)
(in module PYME.Analysis.points.QuadTree)
(in module PYME.Analysis.points.QuadTree.QTrend)
(in module PYME.Analysis.points.QuadTree.rendQT)
(in module PYME.Analysis.points.twoColourPlot)
(in module PYME.Deconv.deccs_mc)
(in module PYME.localization.FitFactories.SplitterObjFindR)
(in module PYME.localization.FitFactories.SplitterShiftEstFR)
(in module PYME.localization.Test.fitTestJig)
(in module PYME.localization.Test.fitTestJigWC)
(in module PYME.localization.twist)
(in module PYME.misc.aniso)
(in module PYME.misc.facsPlot)
(in module PYME.misc.kdFit)
randn() (in module PYME.Analysis.BleachProfile.deMod)
(in module PYME.Analysis.PSFEst.dec)
(in module PYME.Analysis.multicolourMeta)
(in module PYME.Analysis.points.DeClump.deClumpGUI)
(in module PYME.Analysis.points.EdgeDB.edgeTest)
(in module PYME.Analysis.points.QuadTree)
(in module PYME.Analysis.points.QuadTree.QTrend)
(in module PYME.Analysis.points.QuadTree.rendQT)
(in module PYME.Analysis.points.twoColourPlot)
(in module PYME.Deconv.dec)
(in module PYME.Deconv.deccs_mc)
(in module PYME.Deconv.read_kdf)
(in module PYME.Deconv.richardsonLucy)
(in module PYME.Deconv.richardsonLucyMV)
(in module PYME.Deconv.richardsonLucyMVM)
(in module PYME.Deconv.tq_block_dec)
(in module PYME.Deconv.write_kdf)
(in module PYME.LMVis.rendGauss)
(in module PYME.localization.FitFactories.SplitterObjFindR)
(in module PYME.localization.FitFactories.SplitterShiftEstFR)
(in module PYME.localization.Test.fitTestJig)
(in module PYME.localization.Test.fitTestJigWC)
(in module PYME.localization.twist)
(in module PYME.misc.aniso)
(in module PYME.misc.facsPlot)
(in module PYME.misc.kdFit)
random() (in module PYME.Analysis.multicolourMeta)
(in module PYME.Analysis.points.DeClump.deClumpGUI)
(in module PYME.Analysis.points.EdgeDB.edgeTest)
(in module PYME.Analysis.points.QuadTree)
(in module PYME.Analysis.points.QuadTree.QTrend)
(in module PYME.Analysis.points.QuadTree.rendQT)
(in module PYME.Analysis.points.twoColourPlot)
(in module PYME.Deconv.deccs_mc)
(in module PYME.localization.FitFactories.SplitterObjFindR)
(in module PYME.localization.FitFactories.SplitterShiftEstFR)
(in module PYME.localization.Test.fitTestJig)
(in module PYME.localization.Test.fitTestJigWC)
(in module PYME.localization.twist)
(in module PYME.misc.aniso)
(in module PYME.misc.facsPlot)
(in module PYME.misc.kdFit)
random_integers() (in module PYME.Analysis.multicolourMeta)
(in module PYME.Analysis.points.DeClump.deClumpGUI)
(in module PYME.Analysis.points.EdgeDB.edgeTest)
(in module PYME.Analysis.points.QuadTree)
(in module PYME.Analysis.points.QuadTree.QTrend)
(in module PYME.Analysis.points.QuadTree.rendQT)
(in module PYME.Analysis.points.twoColourPlot)
(in module PYME.Deconv.deccs_mc)
(in module PYME.localization.FitFactories.SplitterObjFindR)
(in module PYME.localization.FitFactories.SplitterShiftEstFR)
(in module PYME.localization.Test.fitTestJig)
(in module PYME.localization.Test.fitTestJigWC)
(in module PYME.localization.twist)
(in module PYME.misc.aniso)
(in module PYME.misc.facsPlot)
(in module PYME.misc.kdFit)
random_sample() (in module PYME.Analysis.multicolourMeta)
(in module PYME.Analysis.points.DeClump.deClumpGUI)
(in module PYME.Analysis.points.EdgeDB.edgeTest)
(in module PYME.Analysis.points.QuadTree)
(in module PYME.Analysis.points.QuadTree.QTrend)
(in module PYME.Analysis.points.QuadTree.rendQT)
(in module PYME.Analysis.points.twoColourPlot)
(in module PYME.Deconv.deccs_mc)
(in module PYME.localization.FitFactories.SplitterObjFindR)
(in module PYME.localization.FitFactories.SplitterShiftEstFR)
(in module PYME.localization.Test.fitTestJig)
(in module PYME.localization.Test.fitTestJigWC)
(in module PYME.localization.twist)
(in module PYME.misc.aniso)
(in module PYME.misc.facsPlot)
(in module PYME.misc.kdFit)
randomSource (class in PYME.IO.tabular)
ranf() (in module PYME.Analysis.multicolourMeta)
(in module PYME.Analysis.points.DeClump.deClumpGUI)
(in module PYME.Analysis.points.EdgeDB.edgeTest)
(in module PYME.Analysis.points.QuadTree)
(in module PYME.Analysis.points.QuadTree.QTrend)
(in module PYME.Analysis.points.QuadTree.rendQT)
(in module PYME.Analysis.points.twoColourPlot)
(in module PYME.Deconv.deccs_mc)
(in module PYME.localization.FitFactories.SplitterObjFindR)
(in module PYME.localization.FitFactories.SplitterShiftEstFR)
(in module PYME.localization.Test.fitTestJig)
(in module PYME.localization.Test.fitTestJigWC)
(in module PYME.localization.twist)
(in module PYME.misc.aniso)
(in module PYME.misc.facsPlot)
(in module PYME.misc.kdFit)
RangeParam (class in PYME.localization.MetaDataEdit)
rate() (PYME.ParallelTasks.nodeserver.CPNodeServer method)
rayleigh() (in module PYME.Analysis.multicolourMeta)
(in module PYME.Analysis.points.DeClump.deClumpGUI)
(in module PYME.Analysis.points.EdgeDB.edgeTest)
(in module PYME.Analysis.points.QuadTree)
(in module PYME.Analysis.points.QuadTree.QTrend)
(in module PYME.Analysis.points.QuadTree.rendQT)
(in module PYME.Analysis.points.twoColourPlot)
(in module PYME.Deconv.deccs_mc)
(in module PYME.localization.FitFactories.SplitterObjFindR)
(in module PYME.localization.FitFactories.SplitterShiftEstFR)
(in module PYME.localization.Test.fitTestJig)
(in module PYME.localization.Test.fitTestJigWC)
(in module PYME.localization.twist)
(in module PYME.misc.aniso)
(in module PYME.misc.facsPlot)
(in module PYME.misc.kdFit)
read() (in module PYME.IO.unifiedIO)
(PYME.misc.TiSettings.TiSettings method)
read3DTiff() (in module PYME.IO.FileUtils.readTiff)
read_bead_data() (in module PYME.Analysis.points.twoColour)
read_cat_from_lines() (in module PYME.misc.read_agf)
read_cat_from_string() (in module PYME.misc.read_agf)
read_glasscat() (in module PYME.misc.read_agf)
read_h5f_cols() (in module PYME.Analysis.points.twoColour)
readbytes() (in module PYME.contrib.lzw)
ReadKdfData() (in module PYME.Deconv.read_kdf)
ReadKdfHeader() (in module PYME.Deconv.read_kdf)
readSpeckles() (in module PYME.IO.FileUtils.readSpeckle)
ReadString() (in module PYME.Deconv.read_kdf)
readZar() (in module PYME.misc.zemax)
rebin() (in module PYME.Analysis.Colocalisation.distColoc)
Rebuild() (PYME.LMVis.pipeline.Pipeline method)
rebuild() (PYME.ui.MetadataTree.MetadataPanel method)
recArrayInput (class in PYME.IO.tabular)
recArrayPanel (class in PYME.ui.recArrayView)
RecArrayTable (class in PYME.ui.recArrayView)
RecarrayTableGrid (class in PYME.ui.recArrayView)
RecipeManager (class in PYME.recipes.recipeGui)
RecipePlotPanel (class in PYME.recipes.recipeGui)
RecipePlugin (class in PYME.DSView.modules.recipes)
RecipeView (class in PYME.recipes.recipeGui)
recolor() (in module PYME.Analysis.BleachProfile.intensProf)
recommendedVariables (PYME.LMVis.importTextDialog.ImportTextDialog attribute)
recreate() (PYME.IO.MetaDataHandler.CachingMDHandler class method)
(PYME.misc.eventSpy.eventInfo method)
Redraw() (PYME.DSView.arrayViewPanel.ArrayViewPanel method)
reduce_catalog() (in module PYME.misc.read_agf)
refr() (PYME.ui.fastGraph.SpecGraphPanel method)
refract (PYME.misc.zemax.DefaultGlass attribute)
RefrData() (PYME.DSView.displaySettingsPanel.dispSettingsPanel method)
(PYME.DSView.displaySettingsPanel.dispSettingsPanel2 method)
refresh() (PYME.LMVis.colourPanel.colourPanel method)
refresh_choices() (PYME.LMVis.Extras.pointSetGeneration.ImageSource method)
(PYME.LMVis.Extras.pointSetGeneration.PointSource method)
RefreshHists() (PYME.DSView.DisplayOptionsPanel.OptionsPanel method)
RefreshRows() (PYME.contrib.listctrlMixins.ListRowHighlighter method)
RefreshScrollbars() (PYME.DSView.scrolledImagePanel.ScrolledImagePanel method)
refreshWarpDrive() (PYME.localization.FitFactories.AstigGaussGPUFitFR.GaussianFitFactory method)
reg_of() (in module PYME.Analysis.optic_flow)
regCmap() (in module PYME.misc.extraCMaps)
RegenFilter() (PYME.LMVis.h5rNoGui.Pipeline method)
RegenSizer() (PYME.ui.autoFoldPanel.foldPanel method)
register() (PYME.misc.pyme_zeroconf.ZeroConfNS method)
register_camera() (PYME.Acquire.microscope.microscope method)
register_endpoint() (in module PYME.ParallelTasks.webframework)
register_legacy_module() (in module PYME.recipes.base)
register_module() (in module PYME.recipes.base)
register_piezo() (PYME.Acquire.microscope.microscope method)
register_service() (PYME.misc.pyme_zeroconf.ZeroConfNS method)
registerChangeListener() (PYME.Acquire.microscope.StateManager method)
registerHandler() (PYME.Acquire.microscope.StateManager method)
release() (PYME.DSView.modules.graphViewPanel.MyNavigationToolbar method)
(PYME.DSView.modules.pupilView.MyNavigationToolbar method)
(PYME.IO.DataSources.AlignDataSource.DataSource method)
(PYME.IO.DataSources.BGSDataSource.DataSource method)
(PYME.IO.DataSources.BioformatsDataSource.DataSource method)
(PYME.IO.DataSources.BufferedDataSource.DataSource method)
(PYME.IO.DataSources.DcimgDataSource.DataSource method)
(PYME.IO.DataSources.FlatFieldDataSource.DataSource method)
(PYME.IO.DataSources.HDFDataSource.DataSource method)
(PYME.IO.DataSources.ImageSeriesDataSource.DataSource method)
(PYME.IO.DataSources.MultiviewDataSource.DataSource method)
(PYME.IO.DataSources.TiffDataSource.DataSource method)
(PYME.IO.DataSources.UnsplitDataSource.DataSource method)
(PYME.ParallelTasks.HDFTaskQueue.myLock method)
release_VM() (in module PYME.IO.DataSources.BioformatsDataSource)
releaseTasks() (PYME.ParallelTasks.DSTaskQueue.DSTaskQueue method)
(PYME.ParallelTasks.HDFTaskQueue.HDFTaskQueue method)
(PYME.ParallelTasks.taskServerZC.TaskQueueSet method)
reloadData() (PYME.IO.DataSources.AlignDataSource.DataSource method)
(PYME.IO.DataSources.BGSDataSource.DataSource method)
(PYME.IO.DataSources.BioformatsDataSource.DataSource method)
(PYME.IO.DataSources.BufferedDataSource.DataSource method)
(PYME.IO.DataSources.DcimgDataSource.DataSource method)
(PYME.IO.DataSources.HDFDataSource.DataSource method)
(PYME.IO.DataSources.ImageSeriesDataSource.DataSource method)
(PYME.IO.DataSources.MultiviewDataSource.DataSource method)
(PYME.IO.DataSources.TiffDataSource.DataSource method)
(PYME.IO.DataSources.UnsplitDataSource.DataSource method)
RemapData() (PYME.DSView.modules.composite.compositor method)
remove_outputs() (PYME.recipes.base.ModuleBase method)
remove_service() (PYME.misc.pyme_zeroconf.ZCListener method)
removeFrame() (PYME.Analysis.buffers.bgFrameBuffer method)
(PYME.IO.DataSources.BGSDataSource.bgFrameBuffer method)
removeInternalFaces() (in module PYME.LMVis.gen3DTriangs)
removeQueue() (PYME.ParallelTasks.taskServerZC.TaskQueueSet method)
Render() (PYME.DSView.arrayViewPanel.ArrayViewPanel method)
renderFit() (PYME.localization.FitFactories.Gauss3DFitR.GaussFitResult method)
(PYME.localization.FitFactories.LatPSFFitR.PSFFitResult method)
renderTetrahedra() (in module PYME.LMVis.gen3DTriangs)
rendGauss() (in module PYME.LMVis.rendGauss)
(in module PYME.LMVis.visHelpers)
rendGauss3D() (in module PYME.LMVis.visHelpers)
rendGaussNested() (in module PYME.LMVis.rendGauss)
rendGaussNestedPS() (in module PYME.LMVis.rendGauss)
rendGaussNestedXYCorr() (in module PYME.LMVis.rendGauss)
rendGaussP() (in module PYME.LMVis.rendGauss)
rendGaussProd() (in module PYME.LMVis.visHelpers)
rendHist() (in module PYME.LMVis.rendGauss)
(in module PYME.LMVis.visHelpers)
(in module PYME.LMVis.visHelpersMin)
rendHist3D() (in module PYME.LMVis.visHelpers)
(in module PYME.LMVis.visHelpersMin)
rendHistF() (in module PYME.LMVis.rendGauss)
rendJitTet() (in module PYME.LMVis.visHelpers)
(in module PYME.LMVis.visHelpersMin)
rendJitTri() (in module PYME.LMVis.visHelpers)
(in module PYME.LMVis.visHelpersMin)
rendJitTri2() (in module PYME.LMVis.visHelpers)
rendJitTriang() (in module PYME.LMVis.visHelpers)
(in module PYME.LMVis.visHelpersMin)
rendJitTriang2() (in module PYME.LMVis.visHelpers)
rendJTet() (in module PYME.LMVis.visHelpers)
rendP() (in module PYME.Analysis.Colocalisation.colocScaleDep)
rendQT() (in module PYME.Analysis.points.QuadTree.QTrend)
(in module PYME.Analysis.points.QuadTree.rendQT)
rendQTa() (in module PYME.Analysis.points.QuadTree.QTrend)
(in module PYME.Analysis.points.QuadTree.rendQT)
rendQTan() (in module PYME.Analysis.points.QuadTree.QTrend)
(in module PYME.Analysis.points.QuadTree.rendQT)
rendQTe() (in module PYME.Analysis.points.QuadTree.QTrend)
(in module PYME.Analysis.points.QuadTree.rendQT)
rendS() (in module PYME.Analysis.Colocalisation.colocScaleDep)
rendTri() (in module PYME.LMVis.visHelpers)
(in module PYME.LMVis.visHelpersMin)
rendTri2() (in module PYME.LMVis.visHelpers)
replNoneWith1() (in module PYME.localization.FitFactories.fitCommon)
(in module PYME.localization.FitFactories.Gauss3DFitR)
(in module PYME.localization.FitFactories.SpecGaussFitFR)
(in module PYME.localization.FitFactories.SplitterMultifitSR)
(in module PYME.localization.FitFactories.SplitterObjFindR)
(in module PYME.localization.FitFactories.SplitterShiftEstFR)
report() (in module PYME.util.mProfile.mProfile)
(in module PYME.util.mProfile.p)
request() (PYME.misc.pyme_zeroconf.PatchedServiceInfo method)
requiredVariables (PYME.LMVis.importTextDialog.ImportTextDialog attribute)
reset() (PYME.misc.TiffImagePlugin.ImageFileDirectory method)
ResetDataStack() (PYME.DSView.arrayViewPanel.ArrayViewPanel method)
ResetSelection() (PYME.DSView.displayOptions.DisplayOpts method)
resident() (in module PYME.misc.memUsage)
resizeColumn() (PYME.contrib.listctrlMixins.ListCtrlAutoWidthMixin method)
resizeLastColumn() (PYME.contrib.listctrlMixins.ListCtrlAutoWidthMixin method)
resizePSF() (in module PYME.Deconv.wiener)
resolve() (PYME.misc.pyme_zeroconf.ZeroConfNS method)
resolveDependencies() (PYME.recipes.base.ModuleCollection method)
ResponseNotAllowed() (in module PYME.ParallelTasks.dataserver_wsgi)
ResponseNotFound() (in module PYME.ParallelTasks.dataserver_wsgi)
ResponseOK() (in module PYME.ParallelTasks.dataserver_wsgi)
result_params (PYME.localization.Test.fitTestJigSCMOS.fitTestJig attribute)
results (PYME.localization.Test.fitTestJigSCMOS.fitTestJig attribute)
resultsFilter (class in PYME.IO.tabular)
ResultsView (class in PYME.DSView.modules.sheetView)
retrieve() (PYME.Deconv.tq_block_dec.blocking_deconv method)
RetrieveObjects() (PYME.DSView.modules.blobMeasure.Measurements method)
retrieveValue() (PYME.localization.MetaDataEdit.BoolFloatParam method)
(PYME.localization.MetaDataEdit.BoolParam method)
(PYME.localization.MetaDataEdit.ChoiceParam method)
(PYME.localization.MetaDataEdit.FilenameParam method)
(PYME.localization.MetaDataEdit.FloatListParam method)
(PYME.localization.MetaDataEdit.FloatParam method)
(PYME.localization.MetaDataEdit.IntParam method)
(PYME.localization.MetaDataEdit.RangeParam method)
(PYME.localization.MetaDataEdit.ShiftFieldParam method)
(PYME.localization.MetaDataEdit.StringParam method)
returnCompletedTask() (PYME.ParallelTasks.taskQueue.TaskQueue method)
(PYME.ParallelTasks.taskServerZC.TaskQueueSet method)
returnCompletedTasks() (PYME.ParallelTasks.taskQueue.TaskQueue method)
(PYME.ParallelTasks.taskServerZC.TaskQueueSet method)
reverseDependancyGraph() (PYME.recipes.base.ModuleCollection method)
rgb_to_hls() (in module PYME.misc.colorsys)
rgb_to_hsv() (in module PYME.misc.colorsys)
rgb_to_yiq() (in module PYME.misc.colorsys)
RingCorrelator (class in PYME.DSView.modules.fourierRingCorrelation)
rlbead (class in PYME.Deconv.richardsonLucy)
(class in PYME.Deconv.richardsonLucyMV)
(class in PYME.Deconv.richardsonLucyMVM)
rldec (class in PYME.Deconv.richardsonLucy)
(class in PYME.Deconv.richardsonLucyMV)
(class in PYME.Deconv.richardsonLucyMVM)
robustLin2Lhood() (in module PYME.Analysis.points.twoColour)
robustLin3Lhood() (in module PYME.Analysis.points.twoColour)
robustLin3zLhood() (in module PYME.Analysis.points.twoColour)
robustLinLhood() (in module PYME.Analysis.points.twoColour)
roi_at() (in module PYME.Analysis.angleFilter)
roiHalfSize (PYME.Deconv.deccs2.dec_sparse attribute)
ROT90 (PYME.DSView.displayOptions.DisplayOpts attribute)
Rp() (in module PYME.misc.snells)
Rs() (in module PYME.misc.snells)
run() (in module PYME.ParallelTasks.distributor)
(PYME.Acquire.ExecTools.GUIInitTask method)
(PYME.Deconv.decThread.decThread method)
(PYME.IO.testClusterSpooling.TestSpooler method)
(PYME.ParallelTasks.HTTPDataServer.statusPoller method)
(PYME.ParallelTasks.taskServerZC.TaskWatcher method)
(PYME.misc.wxThread.wxThread method)
(PYME.util.mProfile.tProfile.T method)
(in module PYME.ParallelTasks.nodeserver)
run_t() (in module PYME.Analysis.points.SoftRend.testTetrahedra)
runCP() (in module PYME.ParallelTasks.distributor)
(in module PYME.ParallelTasks.nodeserver)
RunCurrentRecipe() (PYME.DSView.modules.recipes.RecipePlugin method)
RunCurrentRecipeAndSave() (PYME.DSView.modules.recipes.RecipePlugin method)
runRec() (in module PYME.recipes.batchProcess)
runRecipe() (in module PYME.recipes.runRecipe)
runTests() (in module PYME.Analysis.PSFEst.psfQuality)
(PYME.localization.Test.fitTestJig.fitTestJig method)
(PYME.localization.Test.fitTestJigSCMOS.fitTestJig method)
(PYME.localization.Test.fitTestJigWC.fitTestJig method)
(in module PYME.util.mProfile.tProfile)
rwlock2 (class in PYME.ParallelTasks.HDFTaskQueue)

S

SA (PYME.DSView.modules.blobMeasure.DataBlock attribute)
sample() (in module PYME.Analysis.multicolourMeta)
(in module PYME.Analysis.points.DeClump.deClumpGUI)
(in module PYME.Analysis.points.EdgeDB.edgeTest)
(in module PYME.Analysis.points.QuadTree)
(in module PYME.Analysis.points.QuadTree.QTrend)
(in module PYME.Analysis.points.QuadTree.rendQT)
(in module PYME.Analysis.points.twoColourPlot)
(in module PYME.Deconv.deccs_mc)
(in module PYME.localization.FitFactories.SplitterObjFindR)
(in module PYME.localization.FitFactories.SplitterShiftEstFR)
(in module PYME.localization.Test.fitTestJig)
(in module PYME.localization.Test.fitTestJigWC)
(in module PYME.localization.twist)
(in module PYME.misc.aniso)
(in module PYME.misc.facsPlot)
(in module PYME.misc.kdFit)
SampleInfoDialog (class in PYME.Acquire.sampleInformation)
SarcomereChecker (class in PYME.Acquire.Utils.sarcSpacing)
satCheck() (PYME.Acquire.microscope.microscope method)
save() (PYME.Analysis.svmSegment.svmClassifier method)
(PYME.Analysis.Tracking.trackUtils.Clump method)
(PYME.DSView.modules.graphViewPanel.MyNavigationToolbar method)
(PYME.DSView.modules.pupilView.MyNavigationToolbar method)
Save() (PYME.IO.image.ImageStack method)
save() (PYME.misc.TiffImagePlugin.ImageFileDirectory method)
(PYME.recipes.base.ModuleCollection method)
save_attachments() (PYME.contrib.gohlke.czifile.CziFile method)
save_hdf() (PYME.LMVis.pipeline.Pipeline method)
save_stl() (PYME.DSView.modules.vis3D.visualiser method)
save_txt() (PYME.LMVis.pipeline.Pipeline method)
save_u3d() (PYME.DSView.modules.vis3D.visualiser method)
save_wisdom() (in module PYME.Deconv.fftwWisdom)
save_x3d() (PYME.DSView.modules.vis3D.visualiser method)
saveBlobs() (in module PYME.DSView.modules.extractBlobs)
saveDataFrame() (in module PYME.recipes.runRecipe)
saveDeconvolution() (PYME.DSView.modules.deconvolution.deconvolver method)
saveFilter() (in module PYME.IO.FileUtils.h5rToTxt)
saveFits() (PYME.DSView.modules.blobFinding.blobFinder method)
saveOutput() (in module PYME.recipes.runRecipe)
SavePerspective() (PYME.Acquire.acquiremainframe.PYMEMainFrame method)
savePositions() (PYME.DSView.modules.blobFinding.blobFinder method)
saveShiftmaps() (PYME.DSView.modules.blobFinding.blobFinder method)
saveTabular() (in module PYME.recipes.runRecipe)
saveTiffMultipage() (in module PYME.IO.FileUtils.saveTiffStack)
SaveTracks() (PYME.DSView.modules.particleTracking.ParticleTrackingView method)
sc (PYME.Analysis.points.twoColour.lin3Model attribute)
(PYME.Analysis.points.twoColour.lin3zModel attribute)
Scale (class in PYME.recipes.base)
scale (PYME.DSView.arrayViewPanel.ArrayViewPanel attribute)
schemes() (PYME.DSView.modules.blobMeasure.Measurements method)
schemes3D() (PYME.DSView.modules.blobMeasure.Measurements method)
Scroll() (PYME.DSView.scrolledImagePanel.ScrolledImagePanel method)
ScrolledImagePanel (class in PYME.DSView.scrolledImagePanel)
secondaryAxis (PYME.DSView.modules.blobMeasure.DataBlock attribute)
seed() (in module PYME.Analysis.multicolourMeta)
(in module PYME.Analysis.points.DeClump.deClumpGUI)
(in module PYME.Analysis.points.EdgeDB.edgeTest)
(in module PYME.Analysis.points.QuadTree)
(in module PYME.Analysis.points.QuadTree.QTrend)
(in module PYME.Analysis.points.QuadTree.rendQT)
(in module PYME.Analysis.points.twoColourPlot)
(in module PYME.Deconv.deccs_mc)
(in module PYME.localization.FitFactories.SplitterObjFindR)
(in module PYME.localization.FitFactories.SplitterShiftEstFR)
(in module PYME.localization.Test.fitTestJig)
(in module PYME.localization.Test.fitTestJigWC)
(in module PYME.localization.twist)
(in module PYME.misc.aniso)
(in module PYME.misc.facsPlot)
(in module PYME.misc.kdFit)
seek() (PYME.misc.TiffImagePlugin.TiffImageFile method)
segment() (in module PYME.Analysis.points.EdgeDB.segment)
(PYME.Analysis.points.EdgeDB.edges.EdgeDB method)
(in module PYME.LMVis.gen3DTriangs)
SegmentationPanel (class in PYME.DSView.modules.segmentation)
segmenter (class in PYME.DSView.modules.segmentation)
(class in PYME.LMVis.segmentLL)
segmentNR() (in module PYME.LMVis.gen3DTriangs)
segments() (PYME.contrib.gohlke.czifile.CziFile method)
selectBeforePopup() (in module PYME.contrib.listctrlMixins)
selectCallback() (PYME.contrib.TextCtrlAutoComplete.test method)
selectDataSource() (PYME.LMVis.pipeline.Pipeline method)
selectedDataSource (PYME.LMVis.pipeline.Pipeline attribute)
SELECTION_LINE (PYME.DSView.displayOptions.DisplayOpts attribute)
SELECTION_RECTANGLE (PYME.DSView.displayOptions.DisplayOpts attribute)
SELECTION_SQUIGLE (PYME.DSView.displayOptions.DisplayOpts attribute)
SelectLabel (class in PYME.recipes.processing)
SelectTableColumns (class in PYME.recipes.tablefilters)
Sellmeier() (in module PYME.misc.glassModel)
send_error() (PYME.ParallelTasks.HTTPDataServer.PYMEHTTPRequestHandler method)
send_head() (PYME.ParallelTasks.HTTPDataServer.PYMEHTTPRequestHandler method)
seqPanel (class in PYME.Acquire.ui.seqdialog)
SeqProgressPanel (class in PYME.Acquire.ui.seqdialog)
series (PYME.contrib.gohlke.tifffile.TIFFfile attribute)
set_cursor() (PYME.DSView.modules.graphViewPanel.MyNavigationToolbar method)
(PYME.DSView.modules.pupilView.MyNavigationToolbar method)
set_history_buttons() (PYME.DSView.modules.graphViewPanel.MyNavigationToolbar method)
(PYME.DSView.modules.pupilView.MyNavigationToolbar method)
set_message() (PYME.DSView.modules.graphViewPanel.MyNavigationToolbar method)
(PYME.DSView.modules.pupilView.MyNavigationToolbar method)
set_state() (in module PYME.Analysis.multicolourMeta)
(in module PYME.Analysis.points.DeClump.deClumpGUI)
(in module PYME.Analysis.points.EdgeDB.edgeTest)
(in module PYME.Analysis.points.QuadTree)
(in module PYME.Analysis.points.QuadTree.QTrend)
(in module PYME.Analysis.points.QuadTree.rendQT)
(in module PYME.Analysis.points.twoColourPlot)
(in module PYME.Deconv.deccs_mc)
(in module PYME.localization.FitFactories.SplitterObjFindR)
(in module PYME.localization.FitFactories.SplitterShiftEstFR)
(in module PYME.localization.Test.fitTestJig)
(in module PYME.localization.Test.fitTestJigWC)
(in module PYME.localization.twist)
(in module PYME.misc.aniso)
(in module PYME.misc.facsPlot)
(in module PYME.misc.kdFit)
set_status_bar() (PYME.DSView.modules.graphViewPanel.MyNavigationToolbar method)
(PYME.DSView.modules.pupilView.MyNavigationToolbar method)
setarray() (PYME.misc.editgrid.EditGrid method)
SetAspect() (PYME.DSView.displayOptions.DisplayOpts method)
SetBackend() (PYME.Analysis.processLogger.ContextManager method)
setBackgroundBufferPCT() (PYME.IO.DataSources.BGSDataSource.DataSource method)
SetCameraShutter() (in module PYME.Acquire.protocol)
SetCentredRoi() (PYME.Acquire.acquiremainframe.PYMEMainFrame method)
SetCharts() (PYME.DSView.eventLogViewer.eventLogPanel method)
(PYME.DSView.eventLogViewer.eventLogTPanel method)
SetChoices() (PYME.contrib.TextCtrlAutoComplete.TextCtrlAutoComplete method)
SetClumps() (PYME.DSView.modules.particleTracking.TrackList method)
SetCMap() (PYME.DSView.displayOptions.DisplayOpts method)
SetColor() (PYME.contrib.wxPlotPanel.PlotPanel method)
setColour() (PYME.IO.tabular.colourFilter method)
SetColumnCount() (PYME.contrib.listctrlMixins.ColumnSorterMixin method)
SetContinuousMode() (in module PYME.Acquire.protocol)
setCreatorChoices() (PYME.Acquire.sampleInformation.SampleInfoDialog method)
SetData() (PYME.IO.image.ImageStack method)
(PYME.LMVis.pipelineView.PipelineTableGrid method)
(PYME.ui.fastGraph.FastGraphPanel method)
(PYME.ui.histLimits.HistLimitPanel method)
(PYME.ui.recArrayView.RecarrayTableGrid method)
SetDataStack() (PYME.DSView.arrayViewPanel.ArrayViewPanel method)
(PYME.DSView.displayOptions.DisplayOpts method)
setDefaultNamespace() (in module PYME.Acquire.ExecTools)
SetDirection() (PYME.Acquire.stackSettings.StackSettings method)
setDyeChoices() (PYME.Acquire.sampleInformation.SampleInfoDialog method)
setDynamicChoices() (PYME.contrib.TextCtrlAutoComplete.test method)
SetEMGain() (in module PYME.Acquire.protocol)
SetEndPos() (PYME.Acquire.stackSettings.StackSettings method)
setEntry() (PYME.Acquire.HTTPHDFSpooler.HttpSpoolMDHandler method)
(PYME.IO.MetaDataHandler.CachingMDHandler method)
(PYME.IO.MetaDataHandler.HDFMDHandler method)
(PYME.IO.MetaDataHandler.MDHandlerBase method)
(PYME.IO.MetaDataHandler.NestedClassMDHandler method)
(PYME.IO.MetaDataHandler.QueueMDHandler method)
(PYME.IO.MetaDataHandler.XMLMDHandler method)
SetEntryCallback() (PYME.contrib.TextCtrlAutoComplete.TextCtrlAutoComplete method)
SetEventSource() (PYME.DSView.eventLogViewer.eventLogPanel method)
(PYME.DSView.eventLogViewer.eventLogTPanel method)
SetFilter() (PYME.Acquire.sampleInformation.VirtList method)
SetFitInfo() (PYME.DSView.modules.LMAnalysis.LMAnalyser2 method)
SetFitResults() (PYME.DSView.fitInfo.fitDispPanel method)
SetFolded() (PYME.ui.autoFoldPanel.foldButton method)
setfromstring() (PYME.misc.editgrid.EditGrid method)
SetGain() (PYME.DSView.displayOptions.DisplayOpts method)
SetHighlightColor() (PYME.contrib.listctrlMixins.ListRowHighlighter method)
SetHighlightMode() (PYME.contrib.listctrlMixins.ListRowHighlighter method)
SetIntegTime() (in module PYME.Acquire.protocol)
setItem() (PYME.Acquire.microscope.StateManager method)
setItems() (PYME.Acquire.microscope.StateManager method)
setMapping() (PYME.IO.tabular.mappingFilter method)
SetMaster() (PYME.DSView.modules.composite.CompositeDialog method)
SetMatchFunction() (PYME.contrib.TextCtrlAutoComplete.TextCtrlAutoComplete method)
SetMessage() (PYME.Acquire.ui.splashScreen.SplashScreen method)
(PYME.DSView.splashScreen.SplashScreen method)
SetMinMax() (PYME.ui.histLimits.HistLimitPanel method)
SetMultipleChoices() (PYME.contrib.TextCtrlAutoComplete.TextCtrlAutoComplete method)
SetOffset() (PYME.DSView.displayOptions.DisplayOpts method)
SetOrientation() (PYME.DSView.displayOptions.DisplayOpts method)
SetPattern() (PYME.Acquire.Utils.MultiPointScanner.PointScanner method)
SetPercentile() (PYME.ui.histLimits.HistLimitPanel method)
setPopFcn() (PYME.ParallelTasks.taskQueue.TaskQueue method)
(PYME.ParallelTasks.taskServerZC.TaskQueueSet method)
setPopupMenu() (PYME.contrib.listctrlMixins.ListCtrlSelectionManagerMix method)
SetPos() (PYME.Acquire.microscope.microscope method)
SetPrevPos() (PYME.Acquire.stackSettings.StackSettings method)
SetPropagate() (PYME.Acquire.ui.AnalysisSettingsUI.AnalysisSettings method)
SetProtocol() (PYME.Acquire.SpoolController.SpoolController method)
setQueueData() (PYME.ParallelTasks.taskQueue.TaskQueueWithData method)
(PYME.ParallelTasks.taskServerZC.TaskQueueSet method)
setQueueMetaData() (PYME.ParallelTasks.HDFTaskQueue.HDFResultsTaskQueue method)
(PYME.ParallelTasks.HDFTaskQueue.HDFTaskQueue method)
(PYME.ParallelTasks.taskServerZC.TaskQueueSet method)
setQueueMetaDataEntries() (PYME.ParallelTasks.HDFTaskQueue.HDFResultsTaskQueue method)
(PYME.ParallelTasks.HDFTaskQueue.HDFTaskQueue method)
(PYME.ParallelTasks.taskServerZC.TaskQueueSet method)
SetRange() (PYME.DSView.eventLogViewer.eventLogPanel method)
(PYME.DSView.eventLogViewer.eventLogTPanel method)
setResizeColumn() (PYME.contrib.listctrlMixins.ListCtrlAutoWidthMixin method)
SetResults() (PYME.DSView.fitInfo.FitInfoPanel method)
setResults() (PYME.IO.tabular.fitResultsSource method)
SetScale() (PYME.DSView.displayOptions.DisplayOpts method)
SetScanChannel() (PYME.Acquire.stackSettings.StackSettings method)
SetSelectCallback() (PYME.contrib.TextCtrlAutoComplete.TextCtrlAutoComplete method)
SetSelection() (PYME.DSView.displayOptions.DisplayOpts method)
SetSeqLength() (PYME.Acquire.stackSettings.StackSettings method)
SetShiftField() (PYME.IO.DataSources.UnsplitDataSource.DataSource method)
SetShiftmap() (PYME.DSView.modules.composite.ImageList method)
SetShifts() (PYME.IO.DataSources.AlignDataSource.DataSource method)
SetSlice() (PYME.DSView.displayOptions.DisplayOpts method)
setSlideChoices() (PYME.Acquire.sampleInformation.SampleInfoDialog method)
SetSpoolDir() (PYME.Acquire.SpoolController.SpoolController method)
SetSpoolMethod() (PYME.Acquire.SpoolController.SpoolController method)
SetStartMode() (PYME.Acquire.stackSettings.StackSettings method)
SetStartPos() (PYME.Acquire.stackSettings.StackSettings method)
setStatus() (PYME.LMVis.statusLog.StatusLogger method)
SetStatusDispFcn() (in module PYME.LMVis.statusLog)
SetStepSize() (PYME.Acquire.stackSettings.StackSettings method)
setStructureChoices() (PYME.Acquire.sampleInformation.SampleInfoDialog method)
SetThresholdMode() (PYME.ui.histLimits.HistLimitPanel method)
SetTracks() (PYME.DSView.modules.particleTracking.ParticleTrackingView method)
setup_logging() (in module PYME.Acquire.PYMEAcquire)
setValue() (PYME.Acquire.microscope.StateHandler method)
SetValue() (PYME.LMVis.pipelineView.PipelineTable method)
(PYME.ui.histLimits.HistLimitPanel method)
(PYME.ui.recArrayView.RecArrayTable method)
SetValueAndFire() (PYME.ui.histLimits.HistLimitPanel method)
SetVirtualSize() (PYME.DSView.scrolledImagePanel.ScrolledImagePanel method)
SetVoxelSize() (PYME.Acquire.microscope.microscope method)
sffake (class in PYME.Analysis.points.twoColour)
(class in PYME.misc.sffake)
shape (PYME.contrib.gohlke.czifile.CziFile attribute)
(PYME.DSView.modules.composite.CompositeDialog attribute)
(PYME.IO.DataSources.BaseDataSource.BaseDataSource attribute)
shift_and_rot_model() (in module PYME.Analysis.points.twoColour)
shift_and_rot_model_eval() (in module PYME.Analysis.points.twoColour)
ShiftFieldParam (class in PYME.localization.MetaDataEdit)
ShiftItem() (PYME.DSView.modules.composite.ImageList method)
ShiftmapGenerator (class in PYME.LMVis.Extras.shiftmapGenerator)
ShiftmapSelectionDialog (class in PYME.DSView.modules.composite)
shiftModel (class in PYME.Analysis.points.twoColour)
ShiftPanel (class in PYME.DSView.modules.composite)
shmarray (class in PYME.util.shmarray.shmarray)
shortAxisDist() (PYME.DSView.modules.blobMeasure.BlobObject method)
Show() (PYME.DSView.displayOptions.DisplayOpts method)
ShowDataGrid() (in module PYME.misc.editgrid)
ShowHistLimitFrame() (in module PYME.ui.histLimits)
ShowOpts() (PYME.DSView.arrayViewPanel.ArraySettingsAndViewPanel method)
ShowPreflightResults() (in module PYME.Acquire.ui.preflight)
shuffle() (in module PYME.Analysis.multicolourMeta)
(in module PYME.Analysis.points.DeClump.deClumpGUI)
(in module PYME.Analysis.points.EdgeDB.edgeTest)
(in module PYME.Analysis.points.QuadTree)
(in module PYME.Analysis.points.QuadTree.QTrend)
(in module PYME.Analysis.points.QuadTree.rendQT)
(in module PYME.Analysis.points.twoColourPlot)
(in module PYME.Deconv.deccs_mc)
(in module PYME.localization.FitFactories.SplitterObjFindR)
(in module PYME.localization.FitFactories.SplitterShiftEstFR)
(in module PYME.localization.Test.fitTestJig)
(in module PYME.localization.Test.fitTestJigWC)
(in module PYME.localization.twist)
(in module PYME.misc.aniso)
(in module PYME.misc.facsPlot)
(in module PYME.misc.kdFit)
sigma2s (PYME.recipes.filters.DoGFilter attribute)
sigmas (PYME.recipes.filters.DespeckleFilter attribute)
(PYME.recipes.filters.DoGFilter attribute)
(PYME.recipes.filters.GaussianFilter attribute)
(PYME.recipes.filters.MeanFilter attribute)
(PYME.recipes.filters.MedianFilter attribute)
signalFraction() (in module PYME.Analysis.thresholding)
sim_params (PYME.localization.Test.fitTestJigSCMOS.fitTestJig attribute)
sim_pic() (PYME.Analysis.PSFEst.dec.dec method)
(PYME.Deconv.dec.dec method)
(PYME.Deconv.deccs.dec method)
(PYME.Deconv.deccs2.dec method)
(PYME.Deconv.deccs_mc.dec method)
SimpleMDHandler (class in PYME.IO.MetaDataHandler)
SimpleThreshold (class in PYME.recipes.processing)
simplify_catalog() (in module PYME.misc.read_agf)
Single() (PYME.Acquire.zScanner.zScanner method)
size_x() (in module PYME.Analysis.PSFEst.psfQuality)
sizeC (PYME.IO.DataSources.BaseDataSource.BaseDataSource attribute)
SizeReportCtrl (class in PYME.ui.autoFoldPanel)
SKF_copy_func (class in PYME.recipes.skfilters)
SKF_gabor (class in PYME.recipes.skfilters)
SKF_gabor_kernel (class in PYME.recipes.skfilters)
SKF_gaussian (class in PYME.recipes.skfilters)
SKF_inverse (class in PYME.recipes.skfilters)
SKF_laplace (class in PYME.recipes.skfilters)
SKF_median (class in PYME.recipes.skfilters)
SKF_prewitt (class in PYME.recipes.skfilters)
SKF_prewitt_h (class in PYME.recipes.skfilters)
SKF_prewitt_v (class in PYME.recipes.skfilters)
SKF_rank_order (class in PYME.recipes.skfilters)
SKF_roberts (class in PYME.recipes.skfilters)
SKF_roberts_neg_diag (class in PYME.recipes.skfilters)
SKF_roberts_pos_diag (class in PYME.recipes.skfilters)
SKF_scharr (class in PYME.recipes.skfilters)
SKF_scharr_h (class in PYME.recipes.skfilters)
SKF_scharr_v (class in PYME.recipes.skfilters)
SKF_sobel (class in PYME.recipes.skfilters)
SKF_sobel_h (class in PYME.recipes.skfilters)
SKF_sobel_v (class in PYME.recipes.skfilters)
SKF_threshold_adaptive (class in PYME.recipes.skfilters)
SKF_threshold_isodata (class in PYME.recipes.skfilters)
SKF_threshold_li (class in PYME.recipes.skfilters)
SKF_threshold_otsu (class in PYME.recipes.skfilters)
SKF_threshold_yen (class in PYME.recipes.skfilters)
SKF_wiener (class in PYME.recipes.skfilters)
SKFilter (class in PYME.recipes.skfilters)
SLICE_XY (PYME.DSView.displayOptions.DisplayOpts attribute)
SLICE_XZ (PYME.DSView.displayOptions.DisplayOpts attribute)
SLICE_YZ (PYME.DSView.displayOptions.DisplayOpts attribute)
sliceChoices (PYME.DSView.DisplayOptionsPanel.OptionsPanel attribute)
sliceSize (PYME.IO.image.ImageStack attribute)
slidePanel (class in PYME.Acquire.sampleInformation)
sortDirs() (in module PYME.dataBrowser.dirView)
SortListItems() (PYME.contrib.listctrlMixins.ColumnSorterMixin method)
specAddDialog (class in PYME.LMVis.colourPanel)
SpecFromMetadata() (PYME.LMVis.colourPanel.colourPanel method)
(PYME.LMVis.h5rNoGui.Pipeline method)
SpecGraphPanel (class in PYME.ui.fastGraph)
SplashPanel (class in PYME.Acquire.ui.splashScreen)
(class in PYME.DSView.splashScreen)
SplashScreen (class in PYME.Acquire.ui.splashScreen)
(class in PYME.DSView.splashScreen)
split_cluster_url() (in module PYME.IO.unifiedIO)
splWrap() (in module PYME.localization.FitFactories.SplitterFitFNR)
(in module PYME.localization.FitFactories.SplitterFitFusionR)
SpoolController (class in PYME.Acquire.SpoolController)
spoolData() (PYME.IO.clusterExport.ImageFrameSource method)
Spooler (class in PYME.Acquire.HDFSpooler)
(class in PYME.Acquire.HTTPHDFSpooler)
(class in PYME.Acquire.HTTPSpooler)
(class in PYME.Acquire.QueueSpooler)
(class in PYME.Acquire.Spooler)
spoolImageFromFile() (PYME.IO.clusterExport.ImageFrameSource method)
SpoolStopped() (PYME.Acquire.SpoolController.SpoolController method)
squiggle (class in PYME.DSView.modules.squiggleTools)
StackSettings (class in PYME.Acquire.stackSettings)
stacksize() (in module PYME.misc.memUsage)
standard_cauchy() (in module PYME.Analysis.multicolourMeta)
(in module PYME.Analysis.points.DeClump.deClumpGUI)
(in module PYME.Analysis.points.EdgeDB.edgeTest)
(in module PYME.Analysis.points.QuadTree)
(in module PYME.Analysis.points.QuadTree.QTrend)
(in module PYME.Analysis.points.QuadTree.rendQT)
(in module PYME.Analysis.points.twoColourPlot)
(in module PYME.Deconv.deccs_mc)
(in module PYME.localization.FitFactories.SplitterObjFindR)
(in module PYME.localization.FitFactories.SplitterShiftEstFR)
(in module PYME.localization.Test.fitTestJig)
(in module PYME.localization.Test.fitTestJigWC)
(in module PYME.localization.twist)
(in module PYME.misc.aniso)
(in module PYME.misc.facsPlot)
(in module PYME.misc.kdFit)
standard_exponential() (in module PYME.Analysis.multicolourMeta)
(in module PYME.Analysis.points.DeClump.deClumpGUI)
(in module PYME.Analysis.points.EdgeDB.edgeTest)
(in module PYME.Analysis.points.QuadTree)
(in module PYME.Analysis.points.QuadTree.QTrend)
(in module PYME.Analysis.points.QuadTree.rendQT)
(in module PYME.Analysis.points.twoColourPlot)
(in module PYME.Deconv.deccs_mc)
(in module PYME.localization.FitFactories.SplitterObjFindR)
(in module PYME.localization.FitFactories.SplitterShiftEstFR)
(in module PYME.localization.Test.fitTestJig)
(in module PYME.localization.Test.fitTestJigWC)
(in module PYME.localization.twist)
(in module PYME.misc.aniso)
(in module PYME.misc.facsPlot)
(in module PYME.misc.kdFit)
standard_gamma() (in module PYME.Analysis.multicolourMeta)
(in module PYME.Analysis.points.DeClump.deClumpGUI)
(in module PYME.Analysis.points.EdgeDB.edgeTest)
(in module PYME.Analysis.points.QuadTree)
(in module PYME.Analysis.points.QuadTree.QTrend)
(in module PYME.Analysis.points.QuadTree.rendQT)
(in module PYME.Analysis.points.twoColourPlot)
(in module PYME.Deconv.deccs_mc)
(in module PYME.localization.FitFactories.SplitterObjFindR)
(in module PYME.localization.FitFactories.SplitterShiftEstFR)
(in module PYME.localization.Test.fitTestJig)
(in module PYME.localization.Test.fitTestJigWC)
(in module PYME.localization.twist)
(in module PYME.misc.aniso)
(in module PYME.misc.facsPlot)
(in module PYME.misc.kdFit)
standard_normal() (in module PYME.Analysis.multicolourMeta)
(in module PYME.Analysis.points.DeClump.deClumpGUI)
(in module PYME.Analysis.points.EdgeDB.edgeTest)
(in module PYME.Analysis.points.QuadTree)
(in module PYME.Analysis.points.QuadTree.QTrend)
(in module PYME.Analysis.points.QuadTree.rendQT)
(in module PYME.Analysis.points.twoColourPlot)
(in module PYME.Deconv.deccs_mc)
(in module PYME.localization.FitFactories.SplitterObjFindR)
(in module PYME.localization.FitFactories.SplitterShiftEstFR)
(in module PYME.localization.Test.fitTestJig)
(in module PYME.localization.Test.fitTestJigWC)
(in module PYME.localization.twist)
(in module PYME.misc.aniso)
(in module PYME.misc.facsPlot)
(in module PYME.misc.kdFit)
standard_t() (in module PYME.Analysis.multicolourMeta)
(in module PYME.Analysis.points.DeClump.deClumpGUI)
(in module PYME.Analysis.points.EdgeDB.edgeTest)
(in module PYME.Analysis.points.QuadTree)
(in module PYME.Analysis.points.QuadTree.QTrend)
(in module PYME.Analysis.points.QuadTree.rendQT)
(in module PYME.Analysis.points.twoColourPlot)
(in module PYME.Deconv.deccs_mc)
(in module PYME.localization.FitFactories.SplitterObjFindR)
(in module PYME.localization.FitFactories.SplitterShiftEstFR)
(in module PYME.localization.Test.fitTestJig)
(in module PYME.localization.Test.fitTestJigWC)
(in module PYME.localization.twist)
(in module PYME.misc.aniso)
(in module PYME.misc.facsPlot)
(in module PYME.misc.kdFit)
start (PYME.contrib.gohlke.czifile.CziFile attribute)
start() (PYME.Acquire.frameWrangler.FrameWrangler method)
(PYME.Acquire.Utils.MultiPointScanner.PointScanner method)
(PYME.Acquire.Utils.pointScanner.PointScanner method)
(PYME.Acquire.Utils.pointScanner.PointScanner3D method)
Start() (PYME.Acquire.zScanner.zScanner method)
START_AND_END (PYME.Acquire.stackSettings.StackSettings attribute)
startDuplicator() (in module PYME.IO.clusterDuplication)
startFrameWrangler() (PYME.Acquire.microscope.microscope method)
startGuess() (PYME.Deconv.dec.dec method)
(PYME.Deconv.deccs.dec method)
(PYME.Deconv.deccs2.dec method)
(PYME.Deconv.deccs_mc.dec method)
(PYME.Deconv.richardsonLucy.rldec method)
(PYME.Deconv.richardsonLucyMV.rldec method)
(PYME.Deconv.richardsonLucyMVM.rldec method)
StartSelection() (PYME.DSView.arrayViewPanel.ArrayViewPanel method)
(PYME.LMVis.imageView.ImageViewPanel method)
StartServing() (in module PYME.DSView.htmlServe)
(PYME.DSView.modules.blobMeasure.Measurements method)
StartSpool() (PYME.Acquire.HTTPSpooler.Spooler method)
(PYME.Acquire.Spooler.Spooler method)
StartSpooling() (PYME.Acquire.SpoolController.SpoolController method)
StateHandler (class in PYME.Acquire.microscope)
StateManager (class in PYME.Acquire.microscope)
status() (PYME.ParallelTasks.nodeserver.CPNodeServer method)
StatusBarUpdate() (PYME.Acquire.acquiremainframe.PYMEMainFrame method)
StatusLogger (class in PYME.LMVis.statusLog)
statusPoller (class in PYME.ParallelTasks.HTTPDataServer)
stokesEinstein() (in module PYME.Analysis.Tracking.msd)
stop() (PYME.Acquire.frameWrangler.FrameWrangler method)
(PYME.Acquire.Utils.MultiPointScanner.PointScanner method)
(PYME.Acquire.Utils.pointScanner.PointScanner method)
(PYME.Acquire.Utils.pointScanner.PointScanner3D method)
Stop() (PYME.Acquire.zScanner.zScanner method)
stop() (PYME.ParallelTasks.distributor.Distributor method)
(PYME.ParallelTasks.HTTPDataServer.statusPoller method)
(PYME.ParallelTasks.distributor.TaskQueue method)
(PYME.ParallelTasks.nodeserver.NodeServer method)
stopDuplicator() (in module PYME.IO.clusterDuplication)
StopSpool() (PYME.Acquire.HDFSpooler.Spooler method)
(PYME.Acquire.HTTPHDFSpooler.Spooler method)
(PYME.Acquire.HTTPSpooler.Spooler method)
(PYME.Acquire.Spooler.Spooler method)
StopSpooling() (PYME.Acquire.SpoolController.SpoolController method)
StringParam (class in PYME.localization.MetaDataEdit)
stylesheet (PYME.util.mProfile.colorize_db_t.Parser attribute)
subblock_directory (PYME.contrib.gohlke.czifile.CziFile attribute)
subblocks() (PYME.contrib.gohlke.czifile.CziFile method)
subsearch() (PYME.Analysis.PSFEst.dec.dec method)
(PYME.Deconv.dec.dec method)
(PYME.Deconv.deccs.dec method)
(PYME.Deconv.deccs2.dec method)
(PYME.Deconv.deccs_mc.dec method)
Subtract (class in PYME.recipes.base)
suggest_cluster_filename() (in module PYME.IO.clusterExport)
sum (PYME.DSView.modules.blobMeasure.DataBlock attribute)
Surface (class in PYME.misc.zemax)
svmClassifier (class in PYME.Analysis.svmSegment)
syncer (class in PYME.DSView.modules.synchronise)
Synchronise() (PYME.DSView.displayOptions.DisplayOpts method)

T

T (class in PYME.util.mProfile.tProfile)
(in module PYME.Acquire.protocol)
t1() (in module PYME.util.mProfile.tProfile)
TablesBackend (class in PYME.Analysis.processLogger)
TabularBase (class in PYME.IO.tabular)
Tag() (PYME.Acquire.positionTracker.PositionTracker method)
Task (class in PYME.ParallelTasks.taskDef)
TASK_DONE (PYME.Acquire.ExecTools.BGInitTask attribute)
TASK_FAILED (PYME.Acquire.ExecTools.BGInitTask attribute)
TASK_RUNNING (PYME.Acquire.ExecTools.BGInitTask attribute)
TaskInfo (class in PYME.ParallelTasks.distributor)
TaskListProtocol (class in PYME.Acquire.protocol)
TaskListTask (class in PYME.Acquire.protocol)
TaskQueue (class in PYME.ParallelTasks.distributor)
(class in PYME.ParallelTasks.taskQueue)
TaskQueueSet (class in PYME.ParallelTasks.taskServerZC)
TaskQueueWithData (class in PYME.ParallelTasks.taskQueue)
TaskResult (class in PYME.ParallelTasks.taskDef)
tasks() (PYME.ParallelTasks.distributor.CPDistributor method)
(PYME.ParallelTasks.nodeserver.CPNodeServer method)
TaskWatcher (class in PYME.ParallelTasks.taskServerZC)
taskWorker (class in PYME.ParallelTasks.taskWorkerHTTP)
te() (in module PYME.util.mProfile.mProfile)
(in module PYME.util.mProfile.p)
tell() (PYME.misc.TiffImagePlugin.TiffImageFile method)
TempPlotter (class in PYME.LMVis.Extras.temperaturePlot)
tertiaryAxis (PYME.DSView.modules.blobMeasure.DataBlock attribute)
test (class in PYME.contrib.TextCtrlAutoComplete)
test() (in module PYME.Analysis.points.EdgeDB.edgeTest)
(in module PYME.DSView.LUT.test_lut)
(in module PYME.contrib.pad)
(in module PYME.util.shmarray.shmTest)
test_function() (in module PYME.util.mProfile.tProfile)
test_method() (PYME.util.mProfile.tProfile.T method)
test_ps_app() (in module PYME.Analysis.PSFGen.test_ps_app)
TestCurrentRecipe() (PYME.DSView.modules.recipes.RecipePlugin method)
testFrame() (PYME.DSView.modules.LMAnalysis.LMAnalyser2 method)
testObj() (in module PYME.LMVis.gen3DTriangs)
TestSpooler (class in PYME.IO.testClusterSpooling)
TextCtrlAutoComplete (class in PYME.contrib.TextCtrlAutoComplete)
TextEditMixin (class in PYME.contrib.listctrlMixins)
(class in PYME.ui.MetadataTree)
TextFileHeaderParse() (PYME.LMVis.importTextDialog.ImportTextDialog method)
textfileSource (class in PYME.IO.tabular)
th() (in module PYME.Analysis.angleFilter)
th2() (in module PYME.Analysis.angleFilter)
Theta (PYME.DSView.modules.blobMeasure.DataBlock attribute)
theta_t() (in module PYME.misc.snells)
thiolInt() (in module PYME.Analysis.BleachProfile.deMod)
thread_profiler (class in PYME.util.fProfile.fProfile)
ThreadedHTTPServer (class in PYME.ParallelTasks.HTTPDataServer)
thresholdedManders() (in module PYME.Analysis.Colocalisation.correlationCoeffs)
thresholds (PYME.DSView.displayOptions.DisplayOpts attribute)
thumb() (in module PYME.dataBrowser.thumbnails)
Tick() (PYME.Acquire.ActionManager.ActionManager method)
(PYME.Acquire.positionTracker.PositionTracker method)
(PYME.Acquire.ui.HDFSpoolFrame.PanSpool method)
(PYME.Acquire.ui.seqdialog.SeqProgressPanel method)
(PYME.Acquire.ui.splashScreen.SplashScreen method)
tick() (PYME.Acquire.Utils.MultiPointScanner.PointScanner method)
(PYME.Acquire.Utils.pointScanner.PointScanner method)
(PYME.Acquire.Utils.pointScanner.PointScanner3D method)
Tick() (PYME.Deconv.deconvDialogs.DeconvProgressDialog method)
(PYME.DSView.modules.segmentation.SegmentationPanel method)
(PYME.DSView.splashScreen.SplashScreen method)
(PYME.Deconv.deconvDialogs.DeconvProgressPanel method)
TIFFfile (class in PYME.contrib.gohlke.tifffile)
TiffImageFile (class in PYME.misc.TiffImagePlugin)
TiffMP (class in PYME.IO.FileUtils.saveTiffStack)
TiffSeriesExporter (class in PYME.IO.dataExporter)
TiffStackExporter (class in PYME.IO.dataExporter)
tile() (in module PYME.Analysis.deTile)
tile_pyramid() (in module PYME.Analysis.deTile)
tiler (class in PYME.DSView.modules.tiling)
timeToFrames() (in module PYME.Analysis.piecewiseMapping)
TiSettings (class in PYME.misc.TiSettings)
to_hdf() (PYME.IO.tabular.TabularBase method)
to_JSON() (PYME.Acquire.HTTPSpooler.EventLogger method)
(PYME.Analysis.points.twoColour.shiftModel method)
(PYME.IO.MetaDataHandler.MDHandlerBase method)
to_recarray() (PYME.IO.tabular.TabularBase method)
to_svg() (in module PYME.recipes.recipeLayout)
toarray() (PYME.misc.editgrid.EditGrid method)
toDataFrame() (PYME.IO.tabular.TabularBase method)
(PYME.LMVis.pipeline.Pipeline method)
ToggleItem() (PYME.contrib.listctrlMixins.CheckListCtrlMixin method)
TogglePin() (PYME.ui.autoFoldPanel.foldingPane method)
toJSON() (PYME.recipes.base.ModuleCollection method)
toPyOptic() (PYME.misc.zemax.ZMX method)
tostring() (PYME.misc.editgrid.EditGrid method)
total_nglasses() (in module PYME.misc.read_agf)
toXls() (PYME.DSView.modules.blobMeasure.Measurements method)
toYAML() (PYME.recipes.base.ModuleCollection method)
Tp() (in module PYME.misc.snells)
tq (PYME.DSView.modules.LMAnalysis.LMAnalyser2 attribute)
tqPopFcn() (in module PYME.localization.remFitBuf)
traceModel() (in module PYME.Analysis.BleachProfile.intensProf)
traceModelDE() (in module PYME.Analysis.BleachProfile.intensProf)
traceModelDE1() (in module PYME.Analysis.BleachProfile.intensProf)
Track (class in PYME.Analysis.Tracking.trackUtils)
Track() (PYME.recipes.tracking.TrackFeatures method)
trackDetail() (PYME.DSView.modules.particleTracking.ParticleTrackingView method)
TrackDisplay (class in PYME.DSView.overlays)
Tracker (class in PYME.Analysis.Tracking.tracking)
TrackerPanel (class in PYME.Acquire.positionTracker)
TrackerPlotPanel (class in PYME.Acquire.positionTracker)
TrackFeatures (class in PYME.recipes.tracking)
TrackList (class in PYME.DSView.modules.particleTracking)
TrackManager (class in PYME.Analysis.Tracking.trackUtils)
TrackWithPipeline() (PYME.recipes.tracking.TrackFeatures method)
train() (PYME.Analysis.svmSegment.svmClassifier method)
trainAndClassify() (PYME.Analysis.svmSegment.svmClassifier method)
trainClassifier() (in module PYME.Analysis.svmSegment)
trait_view() (PYME.recipes.base.ModuleBase method)
traits_view (PYME.DSView.modules.flowView.FlowView attribute)
(PYME.LMVis.Extras.pointSetGeneration.Generator attribute)
trajectory (PYME.Analysis.Tracking.trackUtils.Track attribute)
translate_path() (PYME.ParallelTasks.dataserver_wsgi.dataserver method)
translateSeparators() (in module PYME.IO.FileUtils.nameUtils)
Triangle3DRenderer (class in PYME.LMVis.renderers)
TriangleRenderer (class in PYME.LMVis.renderers)
TriangleRendererW (class in PYME.LMVis.renderers)
trianglesEqual() (in module PYME.LMVis.gen3DTriangs)
triangular() (in module PYME.Analysis.multicolourMeta)
(in module PYME.Analysis.points.DeClump.deClumpGUI)
(in module PYME.Analysis.points.EdgeDB.edgeTest)
(in module PYME.Analysis.points.QuadTree)
(in module PYME.Analysis.points.QuadTree.QTrend)
(in module PYME.Analysis.points.QuadTree.rendQT)
(in module PYME.Analysis.points.twoColourPlot)
(in module PYME.Deconv.deccs_mc)
(in module PYME.localization.FitFactories.SplitterObjFindR)
(in module PYME.localization.FitFactories.SplitterShiftEstFR)
(in module PYME.localization.Test.fitTestJig)
(in module PYME.localization.Test.fitTestJigWC)
(in module PYME.localization.twist)
(in module PYME.misc.aniso)
(in module PYME.misc.facsPlot)
(in module PYME.misc.kdFit)
Ts() (in module PYME.misc.snells)
ttest_ind() (in module PYME.Analysis.moments)
turnAllLasersOff() (PYME.Acquire.microscope.microscope method)
twistCal() (in module PYME.localization.twist)
TxtExporter (class in PYME.IO.dataExporter)

U

U() (in module PYME.Analysis.PSFGen.nijboer_zernike)
Unfold() (PYME.ui.autoFoldPanel.foldingPane method)
uniform() (in module PYME.Analysis.multicolourMeta)
(in module PYME.Analysis.points.DeClump.deClumpGUI)
(in module PYME.Analysis.points.EdgeDB.edgeTest)
(in module PYME.Analysis.points.QuadTree)
(in module PYME.Analysis.points.QuadTree.QTrend)
(in module PYME.Analysis.points.QuadTree.rendQT)
(in module PYME.Analysis.points.twoColourPlot)
(in module PYME.Deconv.deccs_mc)
(in module PYME.localization.FitFactories.SplitterObjFindR)
(in module PYME.localization.FitFactories.SplitterShiftEstFR)
(in module PYME.localization.Test.fitTestJig)
(in module PYME.localization.Test.fitTestJigWC)
(in module PYME.localization.twist)
(in module PYME.misc.aniso)
(in module PYME.misc.facsPlot)
(in module PYME.misc.kdFit)
Unmixer (class in PYME.DSView.modules.splitter)
(class in PYME.DSView.modules.unmixing)
UnMixSettingsDlg (class in PYME.DSView.modules.unmixing)
unNestDtype() (in module PYME.IO.tabular)
unNestNames() (in module PYME.IO.tabular)
unpack() (PYME.contrib.lzw.BitUnpacker method)
unpackbyte() (in module PYME.contrib.lzw)
unpickleSlice() (in module PYME.localization.FitFactories.fitCommon)
UnPin() (PYME.ui.autoFoldPanel.foldingPane method)
Unplug() (in module PYME.DSView.modules.flowView)
(PYME.DSView.modules.flowView.FlowView method)
unregister() (PYME.misc.pyme_zeroconf.ZeroConfNS method)
Update() (in module PYME.DSView.modules.eventView)
update() (PYME.Acquire.microscope.StateManager method)
(PYME.Acquire.sampleInformation.slidePanel method)
(PYME.Acquire.ui.AnalysisSettingsUI.AnalysisSettingsPanel method)
(PYME.Acquire.ui.actionUI.ActionList method)
(PYME.Acquire.ui.intsliders.IntegrationSliders method)
(PYME.Acquire.ui.intsliders.IntegrationSliders_ method)
(PYME.Acquire.ui.lasersliders.LaserSliders method)
(PYME.Acquire.ui.lasersliders.LaserSliders_ method)
(PYME.Acquire.ui.lasersliders.LaserToggles method)
(PYME.Acquire.ui.positionUI.PositionSliders method)
(PYME.DSView.arrayViewPanel.ArraySettingsAndViewPanel method)
(PYME.DSView.dsviewer.DSViewFrame method)
(PYME.DSView.modules.LMAnalysis.LMAnalyser2 method)
(PYME.DSView.modules.deconvolution.deconvolver method)
(PYME.DSView.modules.playback.PlayPanel method)
(PYME.recipes.recipeGui.RecipeView method)
update_from_module_list() (PYME.recipes.base.ModuleCollection method)
update_from_yaml() (PYME.recipes.base.ModuleCollection method)
update_levels() (PYME.ui.histLimits.HistLimitDialog method)
update_pyramid() (PYME.Analysis.deTile.ImagePyramid method)
update_version() (in module PYME.update_version)
updateBuffers() (PYME.localization.remFitBuf.BufferManager method)
UpdateColourFilterChoices() (PYME.LMVis.colourFilterGUI.ColourFilterPane method)
UpdateDisp() (PYME.Acquire.ui.seqdialog.seqPanel method)
(PYME.DSView.fitInfo.FitInfoPanel method)
UpdateFileList() (PYME.recipes.recipeGui.BatchFrame method)
UpdateFileList2() (PYME.recipes.recipeGui.BatchFrame method)
UpdateFreeSpace() (PYME.Acquire.ui.HDFSpoolFrame.PanSpool method)
updateMetadata() (PYME.IO.h5rFile.H5RFile method)
UpdatePointColourChoices() (PYME.LMVis.pointSettingsPanel.PointSettingsPanel method)
updateStatus() (in module PYME.ParallelTasks.HTTPDataServer)
updateTrack() (PYME.Analysis.Tracking.tracking.Tracker method)
updateValue() (PYME.localization.MetaDataEdit.BoolFloatParam method)
(PYME.localization.MetaDataEdit.BoolParam method)
(PYME.localization.MetaDataEdit.ChoiceParam method)
(PYME.localization.MetaDataEdit.FilenameParam method)
(PYME.localization.MetaDataEdit.FloatListParam method)
(PYME.localization.MetaDataEdit.FloatParam method)
(PYME.localization.MetaDataEdit.IntParam method)
(PYME.localization.MetaDataEdit.RangeParam method)
(PYME.localization.MetaDataEdit.StringParam method)
updateView() (PYME.Acquire.Utils.fastTiler.fastTiler method)
updateVX() (PYME.Deconv.richardsonLucyMVM.rldec method)
UPRIGHT (PYME.DSView.displayOptions.DisplayOpts attribute)

V

V() (in module PYME.Analysis.PSFGen.nijboer_zernike)
values (PYME.LMVis.Extras.pointSetGeneration.WRDictEnum attribute)
varnames (PYME.Analysis.Tracking.trackUtils.Clump attribute)
VectorfieldCurl (class in PYME.recipes.processing)
VectorfieldNorm (class in PYME.recipes.processing)
Verify() (PYME.Acquire.stackSettings.StackSettings method)
verify_cluster_results_filename() (in module PYME.ParallelTasks.HTTPTaskPusher)
VibrAnal (class in PYME.Acquire.Utils.vibrationAnalysis)
VibrationAnalyser (class in PYME.LMVis.Extras.vibration)
VibrationSpecgram() (PYME.LMVis.Extras.vibration.VibrationAnalyser method)
View() (in module PYME.misc.mock_traitsui)
View3D() (in module PYME.DSView.dsviewer)
viewdir() (in module PYME.dataBrowser.dirView)
ViewIm3D() (in module PYME.DSView.dsviewer)
VirtList (class in PYME.Acquire.sampleInformation)
visGuiExtras (class in PYME.DSView.modules.visgui)
visualiser (class in PYME.DSView.modules.vis3D)
vlj() (in module PYME.Analysis.PSFGen.nijboer_zernike)
vonmises() (in module PYME.Analysis.multicolourMeta)
(in module PYME.Analysis.points.DeClump.deClumpGUI)
(in module PYME.Analysis.points.EdgeDB.edgeTest)
(in module PYME.Analysis.points.QuadTree)
(in module PYME.Analysis.points.QuadTree.QTrend)
(in module PYME.Analysis.points.QuadTree.rendQT)
(in module PYME.Analysis.points.twoColourPlot)
(in module PYME.Deconv.deccs_mc)
(in module PYME.localization.FitFactories.SplitterObjFindR)
(in module PYME.localization.FitFactories.SplitterShiftEstFR)
(in module PYME.localization.Test.fitTestJig)
(in module PYME.localization.Test.fitTestJigWC)
(in module PYME.localization.twist)
(in module PYME.misc.aniso)
(in module PYME.misc.facsPlot)
(in module PYME.misc.kdFit)
voxelsize (PYME.DSView.modules.composite.CompositeDialog attribute)
(PYME.IO.image.ImageStack attribute)
voxelsize_x() (in module PYME.Analysis.PSFEst.psfQuality)
voxelsize_z_dec() (in module PYME.Analysis.PSFEst.psfQuality)
voxelsize_z_loc() (in module PYME.Analysis.PSFEst.psfQuality)
VoxelSizeDialog (class in PYME.Acquire.ui.voxelSizeDialog)
VoxSizeDialog (class in PYME.DSView.voxSizeDialog)
VS (class in PYME.IO.image)

W

wald() (in module PYME.Analysis.multicolourMeta)
(in module PYME.Analysis.points.DeClump.deClumpGUI)
(in module PYME.Analysis.points.EdgeDB.edgeTest)
(in module PYME.Analysis.points.QuadTree)
(in module PYME.Analysis.points.QuadTree.QTrend)
(in module PYME.Analysis.points.QuadTree.rendQT)
(in module PYME.Analysis.points.twoColourPlot)
(in module PYME.Deconv.deccs_mc)
(in module PYME.localization.FitFactories.SplitterObjFindR)
(in module PYME.localization.FitFactories.SplitterShiftEstFR)
(in module PYME.localization.Test.fitTestJig)
(in module PYME.localization.Test.fitTestJigWC)
(in module PYME.localization.twist)
(in module PYME.misc.aniso)
(in module PYME.misc.facsPlot)
(in module PYME.misc.kdFit)
walk() (in module PYME.IO.clusterIO)
walkFunc() (in module PYME.misc.startCommentify)
warpCorrectRedImage() (in module PYME.Analysis.points.twoColour)
Watershed (class in PYME.recipes.processing)
wavetableZScanner (class in PYME.Acquire.zScanner)
weibull() (in module PYME.Analysis.multicolourMeta)
(in module PYME.Analysis.points.DeClump.deClumpGUI)
(in module PYME.Analysis.points.EdgeDB.edgeTest)
(in module PYME.Analysis.points.QuadTree)
(in module PYME.Analysis.points.QuadTree.QTrend)
(in module PYME.Analysis.points.QuadTree.rendQT)
(in module PYME.Analysis.points.twoColourPlot)
(in module PYME.Deconv.deccs_mc)
(in module PYME.localization.FitFactories.SplitterObjFindR)
(in module PYME.localization.FitFactories.SplitterShiftEstFR)
(in module PYME.localization.Test.fitTestJig)
(in module PYME.localization.Test.fitTestJigWC)
(in module PYME.localization.twist)
(in module PYME.misc.aniso)
(in module PYME.misc.facsPlot)
(in module PYME.misc.kdFit)
weightedAverage() (in module PYME.Analysis.points.DeClump.pyDeClump)
weightedAverage_() (in module PYME.Analysis.points.DeClump.pyDeClump)
WFDistributor (class in PYME.ParallelTasks.distributor)
WFNodeServer (class in PYME.ParallelTasks.nodeserver)
WFPSFFitFactory (class in PYME.localization.FitFactories.InterpFitWFR)
WhiteTophat (class in PYME.recipes.processing)
widefieldify() (in module PYME.LMVis.widefieldify)
width() (in module PYME.Analysis.angleFilter)
(PYME.IO.image.ImageBounds method)
(PYME.LMVis.visHelpersMin.ImageBounds method)
width_filter() (in module PYME.Analysis.angleFilter)
width_filter_m() (in module PYME.Analysis.angleFilter)
width_o() (in module PYME.Analysis.angleFilter)
WienerDeconvolver (class in PYME.DSView.modules.deconvolution)
WinDLL (in module PYME.misc.mock_ctypes)
with_constant() (in module PYME.contrib.pad.pad)
with_linear_ramp() (in module PYME.contrib.pad.pad)
with_maximum() (in module PYME.contrib.pad.pad)
with_mean() (in module PYME.contrib.pad.pad)
with_median() (in module PYME.contrib.pad.pad)
with_minimum() (in module PYME.contrib.pad.pad)
with_reflect() (in module PYME.contrib.pad.pad)
with_wrap() (in module PYME.contrib.pad.pad)
WorkspaceTree (class in PYME.LMVis.workspaceTree)
WorkWrap (class in PYME.LMVis.workspaceTree)
WormlikeSource (class in PYME.LMVis.Extras.pointSetGeneration)
Wrap() (in module PYME.IO.dataWrap)
WRDictEnum (class in PYME.LMVis.Extras.pointSetGeneration)
write() (PYME.DSView.logparser.logwriter method)
(PYME.IO.MetaDataHandler.SimpleMDHandler method)
write_metadata() (PYME.DSView.modules.psfExtraction.psfExtractor method)
writebytes() (in module PYME.contrib.lzw)
WriteKhorosData() (in module PYME.Deconv.write_kdf)
WriteKhorosHeader() (in module PYME.Deconv.write_kdf)
WriteSimple() (PYME.IO.MetaDataHandler.MDHandlerBase method)
writeTiff() (in module PYME.IO.FileUtils.saveTiffStack)
writeXML() (PYME.IO.MetaDataHandler.OMEXMLMDHandler method)
(PYME.IO.MetaDataHandler.XMLMDHandler method)
wsgiref_server() (in module PYME.ParallelTasks.dataserver_wsgi)
wxThread (class in PYME.misc.wxThread)

X

x (PYME.IO.image.VS attribute)
X (PYME.localization.FitFactories.AstigGaussGPUFitFR.GaussianFitFactory attribute)
(PYME.localization.FitFactories.GaussMultifitLinesR.GaussianFitFactory attribute)
(PYME.localization.FitFactories.GaussMultifitR.GaussianFitFactory attribute)
(PYME.localization.FitFactories.GaussMultifitSR.GaussianFitFactory attribute)
(PYME.localization.FitFactories.SplitterMultifitSR.GaussianFitFactory attribute)
x0() (PYME.localization.FitFactories.Gauss3DFitR.GaussFitResult method)
(PYME.localization.FitFactories.LatPSFFitR.PSFFitResult method)
XC (PYME.DSView.modules.blobMeasure.DataBlock attribute)
XMLMDHandler (class in PYME.IO.MetaDataHandler)
xp (PYME.DSView.displayOptions.DisplayOpts attribute)

Y

y (PYME.IO.image.VS attribute)
Y (PYME.localization.FitFactories.AstigGaussGPUFitFR.GaussianFitFactory attribute)
(PYME.localization.FitFactories.GaussMultifitLinesR.GaussianFitFactory attribute)
(PYME.localization.FitFactories.GaussMultifitR.GaussianFitFactory attribute)
(PYME.localization.FitFactories.GaussMultifitSR.GaussianFitFactory attribute)
(PYME.localization.FitFactories.SplitterMultifitSR.GaussianFitFactory attribute)
y0() (PYME.localization.FitFactories.Gauss3DFitR.GaussFitResult method)
(PYME.localization.FitFactories.LatPSFFitR.PSFFitResult method)
YC (PYME.DSView.modules.blobMeasure.DataBlock attribute)
yiq_to_rgb() (in module PYME.misc.colorsys)
yp (PYME.DSView.displayOptions.DisplayOpts attribute)

Z

z (PYME.IO.image.VS attribute)
z() (in module PYME.misc.zernike)
z0() (PYME.localization.FitFactories.Gauss3DFitR.GaussFitResult method)
(PYME.localization.FitFactories.LatPSFFitR.PSFFitResult method)
ZC (PYME.DSView.modules.blobMeasure.DataBlock attribute)
ZCListener (class in PYME.misc.pyme_zeroconf)
ZDEPSHIFT (PYME.Analysis.points.twoColour.lin3zModel attribute)
zernike() (in module PYME.misc.zernike)
zernikeIm() (in module PYME.misc.zernike)
ZeroConfNS (class in PYME.misc.pyme_zeroconf)
zeros() (in module PYME.util.shmarray.shmarray)
zipf() (in module PYME.Analysis.multicolourMeta)
(in module PYME.Analysis.points.DeClump.deClumpGUI)
(in module PYME.Analysis.points.EdgeDB.edgeTest)
(in module PYME.Analysis.points.QuadTree)
(in module PYME.Analysis.points.QuadTree.QTrend)
(in module PYME.Analysis.points.QuadTree.rendQT)
(in module PYME.Analysis.points.twoColourPlot)
(in module PYME.Deconv.deccs_mc)
(in module PYME.localization.FitFactories.SplitterObjFindR)
(in module PYME.localization.FitFactories.SplitterShiftEstFR)
(in module PYME.localization.Test.fitTestJig)
(in module PYME.localization.Test.fitTestJigWC)
(in module PYME.localization.twist)
(in module PYME.misc.aniso)
(in module PYME.misc.facsPlot)
(in module PYME.misc.kdFit)
ZMX (class in PYME.misc.zemax)
Zoom (class in PYME.recipes.filters)
zoom() (PYME.DSView.modules.graphViewPanel.MyNavigationToolbar method)
(PYME.DSView.modules.pupilView.MyNavigationToolbar method)
zp (PYME.DSView.displayOptions.DisplayOpts attribute)
zScanner (class in PYME.Acquire.zScanner)
ZStackTaskListProtocol (class in PYME.Acquire.protocol)